Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS06120

Experiment: formate McAA nicotinic dropout

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	formate McAA nicotinic dropout
1,135,439	-		MMJJ_RS06115	0.43	-0.3
1,135,488	+		MMJJ_RS06115	0.47	+1.8
1,135,498	+		MMJJ_RS06115	0.47	+0.5
1,135,541	-		MMJJ_RS06115	0.51	+0.6
1,135,542	+		MMJJ_RS06115	0.51	-0.5
1,135,649	-		MMJJ_RS06115	0.59	+0.0
1,135,695	-		MMJJ_RS06115	0.62	+0.6
1,135,734	+		MMJJ_RS06115	0.65	+1.1
1,135,814	-		MMJJ_RS06115	0.71	-1.8
1,135,814	-		MMJJ_RS06115	0.71	+0.5
1,135,829	-		MMJJ_RS06115	0.72	+0.1
1,135,830	+		MMJJ_RS06115	0.72	-0.3
1,135,917	-		MMJJ_RS06115	0.79	+1.0
1,135,926	+		MMJJ_RS06115	0.79	+0.6
1,135,989	+		MMJJ_RS06115	0.84	+0.5
1,135,993	-		MMJJ_RS06115	0.84	-0.2
1,135,993	-		MMJJ_RS06115	0.84	-0.3
1,135,993	-		MMJJ_RS06115	0.84	-0.0
1,135,994	+		MMJJ_RS06115	0.84	-0.8
1,135,994	+		MMJJ_RS06115	0.84	-0.6
1,136,030	+		MMJJ_RS06115	0.87	+0.6
1,136,042	-		MMJJ_RS06115	0.88	-0.5
1,136,042	-		MMJJ_RS06115	0.88	-0.0
1,136,047	-		MMJJ_RS06115	0.88	+0.3
1,136,048	+		MMJJ_RS06115	0.88	-0.2
1,136,048	+		MMJJ_RS06115	0.88	-0.3
1,136,048	+		MMJJ_RS06115	0.88	+0.1
1,136,055	-		MMJJ_RS06115	0.89	-0.1
1,136,065	-		MMJJ_RS06115	0.90	+0.1
1,136,066	+		MMJJ_RS06115	0.90	+0.4
1,136,072	-				+0.3
1,136,073	+				+0.1
1,136,103	+				+1.1
1,136,155	-				-0.5
1,136,156	+				+0.2
1,136,156	+				+0.4
1,136,156	+				+0.2
1,136,159	+				+0.4
1,136,180	+				-0.7
1,136,180	+				-0.2
1,136,181	-				-1.5
1,136,221	+				+0.8
1,136,227	-				+0.9
1,136,231	+				+0.2
1,136,234	-				-1.2
1,136,234	-				+0.2
1,136,234	-				-0.3
1,136,235	+				+0.8
1,136,235	+				-0.7
1,136,235	+				+0.5
1,136,235	+				-0.3
1,136,235	+				+0.4
1,136,235	+				+0.6
1,136,238	-				+0.2
1,136,238	-				+0.8
1,136,238	-				+0.9
1,136,238	-				+0.2
1,136,238	-				-0.2
1,136,238	-				+0.8
1,136,238	-				+0.1
1,136,239	+				+0.9
1,136,239	+				-1.5
1,136,239	+				+0.6
1,136,239	+				+0.1
1,136,239	+				-0.2
1,136,239	+				-0.3
1,136,259	+				-0.0
1,136,259	+				+0.3
1,136,266	-				-0.4
1,136,266	-				+1.0
1,136,266	-				+0.0
1,136,270	-				+0.4
1,136,270	-				-3.0
1,136,270	-				-0.2
1,136,270	-				+0.4
1,136,270	-				+0.4
1,136,270	-				-0.5
1,136,270	-				+0.0
1,136,270	-				+0.0
1,136,270	-				-0.2
1,136,270	-				+0.3
1,136,271	+				-1.1
1,136,271	+				-1.3
1,136,271	+				-0.2
1,136,271	+				-0.9
1,136,271	+				-0.4
1,136,286	-				+0.6
1,136,286	-				-0.5
1,136,287	+				-0.0
1,136,287	+				-1.3
1,136,288	-				+0.8
1,136,289	+				-0.1
1,136,291	-				+0.1
1,136,291	-				+0.5
1,136,291	-				+0.7
1,136,292	+				+0.6
1,136,329	-				-1.1
1,136,329	-				-0.1
1,136,330	+				-1.3
1,136,375	-				+0.6
1,136,399	-				-0.5
1,136,418	+		MMJJ_RS06120	0.12	+1.9
1,136,436	+		MMJJ_RS06120	0.14	-0.7
1,136,526	+		MMJJ_RS06120	0.24	+0.3
1,136,572	-		MMJJ_RS06120	0.30	-0.6
1,136,573	+		MMJJ_RS06120	0.30	+0.4
1,136,573	+		MMJJ_RS06120	0.30	+0.0
1,136,574	-		MMJJ_RS06120	0.30	+0.1
1,136,574	-		MMJJ_RS06120	0.30	+1.8
1,136,693	-		MMJJ_RS06120	0.44	+1.1
1,136,693	-		MMJJ_RS06120	0.44	-0.6
1,136,694	+		MMJJ_RS06120	0.44	+0.8
1,136,694	+		MMJJ_RS06120	0.44	+0.1
1,136,706	+		MMJJ_RS06120	0.45	+0.1
1,136,713	+		MMJJ_RS06120	0.46	-0.1
1,136,714	-		MMJJ_RS06120	0.46	+0.7
1,136,715	+		MMJJ_RS06120	0.46	+0.5
1,136,715	+		MMJJ_RS06120	0.46	-0.1
1,136,736	+		MMJJ_RS06120	0.49	-0.5
1,136,736	+		MMJJ_RS06120	0.49	+0.1
1,136,747	-		MMJJ_RS06120	0.50	+1.2
1,136,747	-		MMJJ_RS06120	0.50	-0.9
1,136,783	-		MMJJ_RS06120	0.54	-0.1
1,136,858	-		MMJJ_RS06120	0.63	-2.2
1,136,900	-		MMJJ_RS06120	0.67	-0.1
1,136,913	+		MMJJ_RS06120	0.69	+0.9
1,136,923	-		MMJJ_RS06120	0.70	+0.6
1,136,924	+		MMJJ_RS06120	0.70	+0.6
1,136,924	+		MMJJ_RS06120	0.70	+0.9
1,136,924	+		MMJJ_RS06120	0.70	+0.7
1,136,925	-		MMJJ_RS06120	0.70	+0.6
1,136,925	-		MMJJ_RS06120	0.70	+0.2
1,136,925	-		MMJJ_RS06120	0.70	+0.1
1,136,925	-		MMJJ_RS06120	0.70	+1.5
1,136,928	+		MMJJ_RS06120	0.71	-0.2
1,136,928	+		MMJJ_RS06120	0.71	-1.1
1,136,928	+		MMJJ_RS06120	0.71	+0.7
1,136,934	+		MMJJ_RS06120	0.71	-0.2
1,136,982	-		MMJJ_RS06120	0.77	+0.3
1,136,988	+		MMJJ_RS06120	0.77	+0.4
1,136,990	-		MMJJ_RS06120	0.78	+0.6
1,136,990	-		MMJJ_RS06120	0.78	-2.6
1,137,006	+		MMJJ_RS06120	0.80	+0.1
1,137,125	+				+0.8
1,137,128	-				+0.4
1,137,128	-				+1.2
1,137,185	-				+0.1
1,137,197	-				+0.7
1,137,270	-				-0.2
1,137,270	-				-0.8
1,137,270	-				-0.1
1,137,270	-				-0.8
1,137,271	+				+0.1
1,137,271	+				-1.3
1,137,333	+		MMJJ_RS06125	0.11	-0.7
1,137,335	+		MMJJ_RS06125	0.11	-0.6
1,137,335	+		MMJJ_RS06125	0.11	-0.4
1,137,361	-		MMJJ_RS06125	0.13	+0.4
1,137,361	-		MMJJ_RS06125	0.13	+0.1
1,137,361	-		MMJJ_RS06125	0.13	-1.0
1,137,362	+		MMJJ_RS06125	0.13	-0.3
1,137,362	+		MMJJ_RS06125	0.13	-1.4
1,137,362	+		MMJJ_RS06125	0.13	+0.1
1,137,422	+		MMJJ_RS06125	0.18	-1.4
1,137,483	-		MMJJ_RS06125	0.24	-0.2
1,137,486	-		MMJJ_RS06125	0.24	+0.1
1,137,487	+		MMJJ_RS06125	0.24	-0.7
1,137,502	-		MMJJ_RS06125	0.25	-1.6
1,137,502	-		MMJJ_RS06125	0.25	+0.7
1,137,531	+		MMJJ_RS06125	0.28	+0.7
1,137,562	-		MMJJ_RS06125	0.30	-0.4
1,137,562	-		MMJJ_RS06125	0.30	-0.7
1,137,562	-		MMJJ_RS06125	0.30	-0.2
1,137,563	+		MMJJ_RS06125	0.30	-0.4
1,137,584	+		MMJJ_RS06125	0.32	-0.1
1,137,652	+		MMJJ_RS06125	0.38	+0.3
1,137,681	-		MMJJ_RS06125	0.41	+1.1
1,137,682	+		MMJJ_RS06125	0.41	+0.2
1,137,695	-		MMJJ_RS06125	0.42	-0.1
1,137,695	-		MMJJ_RS06125	0.42	-1.3
1,137,695	-		MMJJ_RS06125	0.42	-0.7
1,137,696	+		MMJJ_RS06125	0.42	-1.4
1,137,696	+		MMJJ_RS06125	0.42	-0.5
1,137,717	-		MMJJ_RS06125	0.44	+0.3
1,137,718	+		MMJJ_RS06125	0.44	+0.3
1,137,763	+		MMJJ_RS06125	0.48	-0.4
1,137,796	-		MMJJ_RS06125	0.50	-1.3
1,137,796	-		MMJJ_RS06125	0.50	-1.4
1,137,802	-		MMJJ_RS06125	0.51	-0.1
1,137,816	-		MMJJ_RS06125	0.52	-0.1
1,137,817	+		MMJJ_RS06125	0.52	-0.4
1,137,817	+		MMJJ_RS06125	0.52	+0.1
1,137,819	-		MMJJ_RS06125	0.52	-0.8
1,137,822	+		MMJJ_RS06125	0.53	-0.4
1,137,822	+		MMJJ_RS06125	0.53	-0.0
1,137,857	+		MMJJ_RS06125	0.56	-0.8
1,137,913	-		MMJJ_RS06125	0.60	-1.7
1,137,918	-		MMJJ_RS06125	0.61	-1.5
1,137,919	+		MMJJ_RS06125	0.61	-1.3
1,137,975	-		MMJJ_RS06125	0.66	+0.0
1,137,981	-		MMJJ_RS06125	0.66	-1.2
1,137,982	+		MMJJ_RS06125	0.66	-0.5
1,138,048	-		MMJJ_RS06125	0.72	-0.6
1,138,075	-		MMJJ_RS06125	0.74	-0.8
1,138,076	+		MMJJ_RS06125	0.74	-0.2
1,138,076	+		MMJJ_RS06125	0.74	-3.7
1,138,087	-		MMJJ_RS06125	0.75	-0.3
1,138,146	-		MMJJ_RS06125	0.80	-0.5
1,138,147	+		MMJJ_RS06125	0.80	-2.0
1,138,147	+		MMJJ_RS06125	0.80	-2.2