Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS05975

Experiment: formate McAA nicotinic dropout

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	formate McAA nicotinic dropout
1,110,822	-		MMJJ_RS05965	0.62	+0.7
1,110,822	-		MMJJ_RS05965	0.62	-2.6
1,110,822	-		MMJJ_RS05965	0.62	+0.7
1,110,823	+		MMJJ_RS05965	0.62	+0.6
1,110,823	+		MMJJ_RS05965	0.62	-0.0
1,110,823	+		MMJJ_RS05965	0.62	+2.7
1,110,823	+		MMJJ_RS05965	0.62	-0.2
1,110,823	+		MMJJ_RS05965	0.62	+0.1
1,110,827	-		MMJJ_RS05965	0.62	-0.4
1,110,857	-		MMJJ_RS05965	0.64	+0.3
1,110,858	+		MMJJ_RS05965	0.64	-0.4
1,110,858	+		MMJJ_RS05965	0.64	-1.4
1,110,859	-		MMJJ_RS05965	0.64	+1.0
1,110,860	+		MMJJ_RS05965	0.65	-1.0
1,110,877	+		MMJJ_RS05965	0.66	+0.2
1,110,914	+		MMJJ_RS05965	0.68	-0.3
1,110,914	+		MMJJ_RS05965	0.68	+0.1
1,110,924	-		MMJJ_RS05965	0.69	+0.1
1,110,924	-		MMJJ_RS05965	0.69	-0.7
1,110,925	+		MMJJ_RS05965	0.69	+0.5
1,110,925	+		MMJJ_RS05965	0.69	+0.4
1,110,925	+		MMJJ_RS05965	0.69	+0.5
1,110,940	-		MMJJ_RS05965	0.70	+0.0
1,110,940	-		MMJJ_RS05965	0.70	-0.1
1,110,976	+		MMJJ_RS05965	0.73	+0.2
1,110,986	-		MMJJ_RS05965	0.74	+0.0
1,110,990	+		MMJJ_RS05965	0.74	-0.1
1,111,011	+		MMJJ_RS05965	0.76	+0.1
1,111,011	+		MMJJ_RS05965	0.76	-0.9
1,111,021	-		MMJJ_RS05965	0.76	-0.8
1,111,025	-		MMJJ_RS05965	0.77	+0.2
1,111,025	-		MMJJ_RS05965	0.77	-0.4
1,111,037	-		MMJJ_RS05965	0.77	-1.6
1,111,038	+		MMJJ_RS05965	0.78	+1.5
1,111,047	+		MMJJ_RS05965	0.78	+0.3
1,111,094	-		MMJJ_RS05965	0.82	+0.1
1,111,141	-		MMJJ_RS05965	0.85	-0.8
1,111,141	-		MMJJ_RS05965	0.85	-0.5
1,111,144	-		MMJJ_RS05965	0.85	-0.6
1,111,145	+		MMJJ_RS05965	0.85	+0.0
1,111,170	+		MMJJ_RS05965	0.87	+1.0
1,111,190	-		MMJJ_RS05965	0.89	+0.4
1,111,190	-		MMJJ_RS05965	0.89	+0.4
1,111,203	+		MMJJ_RS05965	0.90	+0.4
1,111,214	-				-0.1
1,111,214	-				+0.2
1,111,250	+				+0.0
1,111,359	-				+0.3
1,111,359	-				+0.6
1,111,360	+				+0.5
1,111,360	+				+0.6
1,111,360	+				-0.5
1,111,361	-				+0.6
1,111,361	-				-0.3
1,111,361	-				-0.1
1,111,361	-				+1.0
1,111,361	-				-0.1
1,111,361	-				+0.7
1,111,361	-				+0.7
1,111,361	-				+0.2
1,111,362	+				-0.4
1,111,362	+				+0.0
1,111,362	+				+0.5
1,111,362	+				+0.4
1,111,362	+				+0.0
1,111,362	+				-0.8
1,111,362	+				+0.8
1,111,362	+				+0.0
1,111,363	-				-0.5
1,111,363	-				-0.1
1,111,364	+				+2.6
1,111,364	+				-0.3
1,111,364	+				+0.5
1,111,364	+				+0.8
1,111,371	-				-0.7
1,111,371	-				-0.1
1,111,377	-				+0.2
1,111,385	+				-0.9
1,111,388	-				+0.0
1,111,388	-				-0.8
1,111,419	-				+0.3
1,111,436	-				+0.8
1,111,436	-				-0.7
1,111,437	+				+0.5
1,111,437	+				+1.5
1,111,440	-				+1.0
1,111,440	-				+0.2
1,111,440	-				-0.7
1,111,440	-				-0.2
1,111,441	+				+0.9
1,111,441	+				-1.4
1,111,441	+				+0.7
1,111,441	+				-0.2
1,111,441	+				+0.4
1,111,441	+				+0.8
1,111,441	+				+1.3
1,111,481	-		MMJJ_RS05970	0.25	+0.8
1,111,524	+		MMJJ_RS05970	0.43	-0.9
1,111,524	+		MMJJ_RS05970	0.43	+0.3
1,111,527	-		MMJJ_RS05970	0.44	+0.8
1,111,527	-		MMJJ_RS05970	0.44	+0.8
1,111,528	+		MMJJ_RS05970	0.44	-0.3
1,111,640	-				+0.5
1,111,687	-				-0.1
1,111,688	+				+0.1
1,111,741	+				-0.0
1,111,764	-				-0.8
1,111,772	+				-1.6
1,111,780	-				-0.2
1,111,790	+				+0.2
1,111,796	+				-0.1
1,111,928	-		MMJJ_RS05975	0.19	+0.3
1,111,982	-		MMJJ_RS05975	0.25	+0.7
1,112,111	-		MMJJ_RS05975	0.41	+0.8
1,112,112	+		MMJJ_RS05975	0.41	+0.1
1,112,143	-		MMJJ_RS05975	0.45	-0.2
1,112,143	-		MMJJ_RS05975	0.45	+0.1
1,112,143	-		MMJJ_RS05975	0.45	+0.9
1,112,144	+		MMJJ_RS05975	0.45	+0.3
1,112,144	+		MMJJ_RS05975	0.45	-0.0
1,112,144	+		MMJJ_RS05975	0.45	+0.6
1,112,176	+		MMJJ_RS05975	0.49	+0.9
1,112,189	-		MMJJ_RS05975	0.51	+0.8
1,112,243	+		MMJJ_RS05975	0.57	-0.8
1,112,243	+		MMJJ_RS05975	0.57	+0.5
1,112,243	+		MMJJ_RS05975	0.57	+0.7
1,112,246	-		MMJJ_RS05975	0.58	+0.2
1,112,246	-		MMJJ_RS05975	0.58	-0.0
1,112,246	-		MMJJ_RS05975	0.58	+1.6
1,112,247	+		MMJJ_RS05975	0.58	+0.3
1,112,247	+		MMJJ_RS05975	0.58	+0.2
1,112,247	+		MMJJ_RS05975	0.58	+0.8
1,112,286	-		MMJJ_RS05975	0.62	+1.0
1,112,287	+		MMJJ_RS05975	0.63	-0.6
1,112,340	+		MMJJ_RS05975	0.69	-0.2
1,112,395	-		MMJJ_RS05975	0.76	-1.2
1,112,396	+		MMJJ_RS05975	0.76	-0.2
1,112,468	+		MMJJ_RS05975	0.85	+0.2
1,112,502	+		MMJJ_RS05975	0.89	-0.7
1,112,587	-				+0.8
1,112,589	-				-0.1
1,112,589	-				-0.1
1,112,590	+				+0.3
1,112,593	-				+0.4
1,112,604	-				-0.6
1,112,605	+				+1.1
1,112,618	-				+0.6
1,112,619	+				-0.3
1,112,619	+				+0.2
1,112,628	+				+0.5
1,112,676	-		MMJJ_RS05980	0.22	-0.2
1,112,697	+		MMJJ_RS05980	0.28	-0.3
1,112,709	-		MMJJ_RS05980	0.32	+2.6
1,112,710	+		MMJJ_RS05980	0.32	+0.1
1,112,711	-		MMJJ_RS05980	0.32	+0.3
1,112,717	-		MMJJ_RS05980	0.34	+0.3
1,112,718	+		MMJJ_RS05980	0.34	+0.7
1,112,730	-		MMJJ_RS05980	0.38	-0.1
1,112,730	-		MMJJ_RS05980	0.38	+1.2
1,112,730	-		MMJJ_RS05980	0.38	+0.3
1,112,754	+		MMJJ_RS05980	0.45	+0.2
1,112,754	+		MMJJ_RS05980	0.45	+0.0
1,112,764	+		MMJJ_RS05980	0.48	-0.3
1,112,769	+		MMJJ_RS05980	0.50	+1.0
1,112,776	-		MMJJ_RS05980	0.52	+0.4
1,112,777	+		MMJJ_RS05980	0.52	+0.4
1,112,833	+		MMJJ_RS05980	0.69	+1.0
1,112,838	-		MMJJ_RS05980	0.71	-1.0
1,112,860	+		MMJJ_RS05980	0.77	-0.6
1,112,867	-		MMJJ_RS05980	0.79	+0.5
1,112,868	+		MMJJ_RS05980	0.80	-0.9
1,112,868	+		MMJJ_RS05980	0.80	+0.4
1,112,869	-		MMJJ_RS05980	0.80	+0.4
1,112,870	+		MMJJ_RS05980	0.80	+0.3
1,112,870	+		MMJJ_RS05980	0.80	-0.0
1,112,888	-		MMJJ_RS05980	0.86	+0.7
1,112,889	+		MMJJ_RS05980	0.86	+0.4
1,112,907	+				-0.5
1,112,907	+				+0.6
1,112,907	+				+0.4
1,112,924	-				+0.7
1,112,924	-				+0.4
1,112,925	+				-0.2
1,112,925	+				+1.0
1,112,925	+				+0.3
1,112,925	+				+0.2
1,112,932	-				+0.3
1,112,932	-				+0.4
1,112,932	-				-0.2
1,112,932	-				+0.3
1,112,932	-				+0.1
1,112,933	+				-0.7
1,112,933	+				+0.8
1,112,942	-				+0.8
1,112,943	+				-0.4
1,112,943	+				-0.1
1,112,950	+				-0.7
1,112,957	+				+0.2
1,112,961	-				-0.4
1,112,961	-				-0.5
1,112,977	+				-0.3
1,113,049	+				-0.8
1,113,092	-				+0.6
1,113,120	+				+0.9
1,113,128	-		MMJJ_RS05985	0.11	+0.2
1,113,148	-		MMJJ_RS05985	0.13	-0.6
1,113,180	-		MMJJ_RS05985	0.18	-0.2
1,113,201	+		MMJJ_RS05985	0.21	+0.3
1,113,259	-		MMJJ_RS05985	0.29	+0.4
1,113,259	-		MMJJ_RS05985	0.29	+0.7
1,113,260	+		MMJJ_RS05985	0.29	+0.1
1,113,260	+		MMJJ_RS05985	0.29	-0.7
1,113,262	+		MMJJ_RS05985	0.29	+0.5
1,113,262	+		MMJJ_RS05985	0.29	+1.1
1,113,281	+		MMJJ_RS05985	0.32	-0.9
1,113,326	-		MMJJ_RS05985	0.38	+0.7
1,113,327	+		MMJJ_RS05985	0.38	-3.0
1,113,327	+		MMJJ_RS05985	0.38	-0.4
1,113,327	+		MMJJ_RS05985	0.38	+2.4
1,113,351	-		MMJJ_RS05985	0.41	-1.4
1,113,352	+		MMJJ_RS05985	0.42	+0.6
1,113,404	-		MMJJ_RS05985	0.49	-0.5
1,113,404	-		MMJJ_RS05985	0.49	-0.6
1,113,405	+		MMJJ_RS05985	0.49	+0.5
1,113,405	+		MMJJ_RS05985	0.49	-0.3
1,113,405	+		MMJJ_RS05985	0.49	-1.1
1,113,405	+		MMJJ_RS05985	0.49	+0.5
1,113,408	-		MMJJ_RS05985	0.49	-0.5
1,113,408	-		MMJJ_RS05985	0.49	+0.6
1,113,420	-		MMJJ_RS05985	0.51	-1.0
1,113,420	-		MMJJ_RS05985	0.51	+1.8
1,113,436	-		MMJJ_RS05985	0.53	+0.1
1,113,437	+		MMJJ_RS05985	0.53	-0.0
1,113,556	-		MMJJ_RS05985	0.70	+0.1