Experiment: formate McAA nicotinic dropout
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MMJJ_RS04710 and MMJJ_RS04715 are separated by 271 nucleotides MMJJ_RS04715 and MMJJ_RS04720 are separated by 49 nucleotides
MMJJ_RS04710: MMJJ_RS04710 - threonine synthase, at 882,793 to 884,007
_RS04710
MMJJ_RS04715: MMJJ_RS04715 - hypothetical protein, at 884,279 to 884,623
_RS04715
MMJJ_RS04720: MMJJ_RS04720 - IMP dehydrogenase, at 884,673 to 886,175
_RS04720
Position (kb) 884
885 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 884.062 kb on - strand at 884.063 kb on + strand at 884.089 kb on + strand at 884.089 kb on + strand at 884.091 kb on - strand at 884.151 kb on - strand at 884.157 kb on - strand at 884.177 kb on - strand at 884.177 kb on - strand at 884.182 kb on + strand at 884.182 kb on + strand at 884.184 kb on - strand at 884.184 kb on - strand at 884.188 kb on - strand at 884.188 kb on - strand at 884.188 kb on - strand at 884.188 kb on - strand at 884.189 kb on + strand at 884.189 kb on + strand at 884.189 kb on + strand at 884.189 kb on + strand at 884.189 kb on + strand at 884.189 kb on + strand at 884.189 kb on + strand at 884.189 kb on + strand at 884.189 kb on + strand at 884.189 kb on + strand at 884.189 kb on + strand at 884.190 kb on - strand at 884.218 kb on - strand at 884.218 kb on - strand at 884.218 kb on - strand at 884.218 kb on - strand at 884.218 kb on - strand at 884.222 kb on - strand at 884.222 kb on - strand at 884.222 kb on - strand at 884.222 kb on - strand at 884.239 kb on + strand at 884.280 kb on - strand at 884.287 kb on + strand at 884.300 kb on - strand at 884.300 kb on - strand at 884.300 kb on - strand at 884.300 kb on - strand at 884.303 kb on + strand at 884.325 kb on + strand, within MMJJ_RS04715 at 884.372 kb on - strand, within MMJJ_RS04715 at 884.425 kb on - strand, within MMJJ_RS04715 at 884.425 kb on - strand, within MMJJ_RS04715 at 884.425 kb on - strand, within MMJJ_RS04715 at 884.426 kb on + strand, within MMJJ_RS04715 at 884.426 kb on + strand, within MMJJ_RS04715 at 884.426 kb on + strand, within MMJJ_RS04715 at 884.481 kb on + strand, within MMJJ_RS04715 at 884.497 kb on - strand, within MMJJ_RS04715 at 884.497 kb on - strand, within MMJJ_RS04715 at 884.498 kb on + strand, within MMJJ_RS04715 at 884.498 kb on + strand, within MMJJ_RS04715 at 884.609 kb on + strand at 884.609 kb on + strand at 884.639 kb on + strand at 884.639 kb on + strand at 885.290 kb on - strand at 885.602 kb on + strand, within MMJJ_RS04720
Per-strain Table
Position Strand Gene LocusTag Fraction formate McAA nicotinic dropout remove 884,062 - +0.3 884,063 + -0.0 884,089 + +0.2 884,089 + -0.9 884,091 - -0.2 884,151 - +0.5 884,157 - -0.8 884,177 - +0.1 884,177 - -0.7 884,182 + -0.0 884,182 + +2.3 884,184 - +0.2 884,184 - -0.0 884,188 - +0.1 884,188 - +0.2 884,188 - +0.2 884,188 - +0.8 884,189 + +0.0 884,189 + +0.0 884,189 + -0.2 884,189 + -0.5 884,189 + +0.1 884,189 + +0.1 884,189 + +0.7 884,189 + +0.8 884,189 + -0.0 884,189 + -0.9 884,189 + +0.2 884,190 - +0.1 884,218 - -0.9 884,218 - +0.7 884,218 - +0.0 884,218 - -2.9 884,218 - +0.1 884,222 - +0.3 884,222 - -0.3 884,222 - -0.0 884,222 - +0.2 884,239 + -0.8 884,280 - -0.7 884,287 + -0.2 884,300 - +0.3 884,300 - +0.4 884,300 - -2.8 884,300 - -0.3 884,303 + -0.6 884,325 + MMJJ_RS04715 0.13 +0.6 884,372 - MMJJ_RS04715 0.27 +0.2 884,425 - MMJJ_RS04715 0.42 +0.6 884,425 - MMJJ_RS04715 0.42 +1.2 884,425 - MMJJ_RS04715 0.42 +0.4 884,426 + MMJJ_RS04715 0.43 -1.2 884,426 + MMJJ_RS04715 0.43 -0.1 884,426 + MMJJ_RS04715 0.43 +1.4 884,481 + MMJJ_RS04715 0.59 +0.0 884,497 - MMJJ_RS04715 0.63 +0.2 884,497 - MMJJ_RS04715 0.63 -0.2 884,498 + MMJJ_RS04715 0.63 +0.7 884,498 + MMJJ_RS04715 0.63 +0.3 884,609 + -2.5 884,609 + -0.1 884,639 + +1.1 884,639 + +0.1 885,290 - -0.3 885,602 + MMJJ_RS04720 0.62 +0.1
Or see this region's nucleotide sequence