Strain Fitness in Methanococcus maripaludis JJ around MMJJ_RS01795

Experiment: formate McAA nicotinic dropout

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMJJ_RS01780 and MMJJ_RS01785 are separated by 82 nucleotidesMMJJ_RS01785 and MMJJ_RS01790 are separated by 119 nucleotidesMMJJ_RS01790 and MMJJ_RS01795 are separated by 63 nucleotidesMMJJ_RS01795 and MMJJ_RS01800 are separated by 64 nucleotides MMJJ_RS01780: MMJJ_RS01780 - AAA family ATPase, at 343,354 to 343,890 _RS01780 MMJJ_RS01785: MMJJ_RS01785 - 50S ribosomal protein L14e, at 343,973 to 344,206 _RS01785 MMJJ_RS01790: MMJJ_RS01790 - pyridoxamine 5'-phosphate oxidase family protein, at 344,326 to 344,727 _RS01790 MMJJ_RS01795: MMJJ_RS01795 - TIGR00266 family protein, at 344,791 to 345,459 _RS01795 MMJJ_RS01800: MMJJ_RS01800 - ADP-ribosylglycohydrolase family protein, at 345,524 to 346,432 _RS01800 Position (kb) 344 345 346Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 344.173 kb on - strand, within MMJJ_RS01785at 344.185 kb on + strandat 344.200 kb on + strandat 344.200 kb on + strandat 344.202 kb on - strandat 344.203 kb on + strandat 344.203 kb on + strandat 344.205 kb on + strandat 344.233 kb on - strandat 344.254 kb on - strandat 344.255 kb on + strandat 344.280 kb on + strandat 344.283 kb on + strandat 344.345 kb on + strandat 344.372 kb on + strand, within MMJJ_RS01790at 344.372 kb on + strand, within MMJJ_RS01790at 344.378 kb on - strand, within MMJJ_RS01790at 344.378 kb on - strand, within MMJJ_RS01790at 344.378 kb on - strand, within MMJJ_RS01790at 344.379 kb on + strand, within MMJJ_RS01790at 344.379 kb on + strand, within MMJJ_RS01790at 344.379 kb on + strand, within MMJJ_RS01790at 344.379 kb on + strand, within MMJJ_RS01790at 344.379 kb on + strand, within MMJJ_RS01790at 344.380 kb on - strand, within MMJJ_RS01790at 344.380 kb on - strand, within MMJJ_RS01790at 344.381 kb on + strand, within MMJJ_RS01790at 344.381 kb on + strand, within MMJJ_RS01790at 344.382 kb on - strand, within MMJJ_RS01790at 344.382 kb on - strand, within MMJJ_RS01790at 344.382 kb on - strand, within MMJJ_RS01790at 344.382 kb on - strand, within MMJJ_RS01790at 344.383 kb on + strand, within MMJJ_RS01790at 344.383 kb on + strand, within MMJJ_RS01790at 344.383 kb on + strand, within MMJJ_RS01790at 344.383 kb on + strand, within MMJJ_RS01790at 344.383 kb on + strand, within MMJJ_RS01790at 344.383 kb on + strand, within MMJJ_RS01790at 344.443 kb on - strand, within MMJJ_RS01790at 344.466 kb on + strand, within MMJJ_RS01790at 344.537 kb on + strand, within MMJJ_RS01790at 344.641 kb on - strand, within MMJJ_RS01790at 344.681 kb on + strand, within MMJJ_RS01790at 344.717 kb on + strandat 344.729 kb on - strandat 344.729 kb on - strandat 344.729 kb on - strandat 344.730 kb on + strandat 344.730 kb on + strandat 344.788 kb on - strandat 344.788 kb on - strandat 344.789 kb on + strandat 344.848 kb on + strandat 344.865 kb on + strand, within MMJJ_RS01795at 344.892 kb on + strand, within MMJJ_RS01795at 344.892 kb on + strand, within MMJJ_RS01795at 344.892 kb on + strand, within MMJJ_RS01795at 344.957 kb on + strand, within MMJJ_RS01795at 345.014 kb on + strand, within MMJJ_RS01795at 345.112 kb on + strand, within MMJJ_RS01795at 345.157 kb on - strand, within MMJJ_RS01795at 345.180 kb on + strand, within MMJJ_RS01795at 345.180 kb on + strand, within MMJJ_RS01795at 345.182 kb on + strand, within MMJJ_RS01795at 345.210 kb on - strand, within MMJJ_RS01795at 345.211 kb on + strand, within MMJJ_RS01795at 345.256 kb on - strand, within MMJJ_RS01795at 345.261 kb on - strand, within MMJJ_RS01795at 345.271 kb on - strand, within MMJJ_RS01795at 345.307 kb on - strand, within MMJJ_RS01795at 345.340 kb on - strand, within MMJJ_RS01795at 345.340 kb on - strand, within MMJJ_RS01795at 345.341 kb on + strand, within MMJJ_RS01795at 345.341 kb on + strand, within MMJJ_RS01795at 345.349 kb on + strand, within MMJJ_RS01795at 345.349 kb on + strand, within MMJJ_RS01795at 345.354 kb on - strand, within MMJJ_RS01795at 345.383 kb on + strand, within MMJJ_RS01795at 345.420 kb on + strandat 345.474 kb on - strandat 345.475 kb on + strandat 345.482 kb on - strandat 345.482 kb on - strandat 345.484 kb on - strandat 345.485 kb on + strandat 345.485 kb on + strandat 345.492 kb on - strandat 345.501 kb on - strandat 345.507 kb on + strandat 345.508 kb on - strandat 345.509 kb on + strandat 345.509 kb on + strandat 345.511 kb on + strandat 345.511 kb on + strandat 345.511 kb on + strandat 345.522 kb on + strandat 345.533 kb on + strandat 345.572 kb on - strandat 345.630 kb on - strand, within MMJJ_RS01800at 345.630 kb on - strand, within MMJJ_RS01800at 345.631 kb on + strand, within MMJJ_RS01800at 345.631 kb on + strand, within MMJJ_RS01800at 345.651 kb on - strand, within MMJJ_RS01800at 345.651 kb on - strand, within MMJJ_RS01800at 345.651 kb on - strand, within MMJJ_RS01800at 345.651 kb on - strand, within MMJJ_RS01800at 345.652 kb on + strand, within MMJJ_RS01800at 345.652 kb on + strand, within MMJJ_RS01800at 345.652 kb on + strand, within MMJJ_RS01800at 345.689 kb on - strand, within MMJJ_RS01800at 345.786 kb on + strand, within MMJJ_RS01800at 345.793 kb on + strand, within MMJJ_RS01800at 345.793 kb on + strand, within MMJJ_RS01800at 345.812 kb on - strand, within MMJJ_RS01800at 345.822 kb on + strand, within MMJJ_RS01800at 345.822 kb on + strand, within MMJJ_RS01800at 345.824 kb on + strand, within MMJJ_RS01800at 345.824 kb on + strand, within MMJJ_RS01800at 345.830 kb on - strand, within MMJJ_RS01800at 345.903 kb on + strand, within MMJJ_RS01800at 345.992 kb on + strand, within MMJJ_RS01800at 345.997 kb on - strand, within MMJJ_RS01800at 345.998 kb on + strand, within MMJJ_RS01800at 346.007 kb on - strand, within MMJJ_RS01800at 346.007 kb on - strand, within MMJJ_RS01800at 346.012 kb on - strand, within MMJJ_RS01800at 346.017 kb on - strand, within MMJJ_RS01800at 346.041 kb on + strand, within MMJJ_RS01800at 346.170 kb on + strand, within MMJJ_RS01800at 346.209 kb on + strand, within MMJJ_RS01800at 346.227 kb on + strand, within MMJJ_RS01800at 346.227 kb on + strand, within MMJJ_RS01800at 346.227 kb on + strand, within MMJJ_RS01800at 346.255 kb on - strand, within MMJJ_RS01800at 346.255 kb on - strand, within MMJJ_RS01800at 346.256 kb on + strand, within MMJJ_RS01800at 346.258 kb on + strand, within MMJJ_RS01800at 346.317 kb on + strand, within MMJJ_RS01800at 346.451 kb on - strandat 346.451 kb on - strandat 346.451 kb on - strandat 346.451 kb on - strandat 346.452 kb on + strandat 346.453 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction formate McAA nicotinic dropout
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344,173 - MMJJ_RS01785 0.85 -0.6
344,185 + +1.5
344,200 + +0.2
344,200 + -2.0
344,202 - -0.3
344,203 + -2.0
344,203 + +1.2
344,205 + -1.2
344,233 - -0.1
344,254 - -0.2
344,255 + +0.3
344,280 + +0.3
344,283 + +0.2
344,345 + -0.3
344,372 + MMJJ_RS01790 0.11 -0.0
344,372 + MMJJ_RS01790 0.11 +1.1
344,378 - MMJJ_RS01790 0.13 +0.3
344,378 - MMJJ_RS01790 0.13 -0.1
344,378 - MMJJ_RS01790 0.13 +0.2
344,379 + MMJJ_RS01790 0.13 +0.6
344,379 + MMJJ_RS01790 0.13 -0.1
344,379 + MMJJ_RS01790 0.13 -0.8
344,379 + MMJJ_RS01790 0.13 -0.3
344,379 + MMJJ_RS01790 0.13 +0.3
344,380 - MMJJ_RS01790 0.13 -1.3
344,380 - MMJJ_RS01790 0.13 +0.5
344,381 + MMJJ_RS01790 0.14 -0.9
344,381 + MMJJ_RS01790 0.14 -2.1
344,382 - MMJJ_RS01790 0.14 -0.5
344,382 - MMJJ_RS01790 0.14 -0.0
344,382 - MMJJ_RS01790 0.14 +1.2
344,382 - MMJJ_RS01790 0.14 +0.2
344,383 + MMJJ_RS01790 0.14 +0.3
344,383 + MMJJ_RS01790 0.14 -0.4
344,383 + MMJJ_RS01790 0.14 +0.6
344,383 + MMJJ_RS01790 0.14 -1.0
344,383 + MMJJ_RS01790 0.14 +0.3
344,383 + MMJJ_RS01790 0.14 +0.2
344,443 - MMJJ_RS01790 0.29 +0.7
344,466 + MMJJ_RS01790 0.35 +0.5
344,537 + MMJJ_RS01790 0.52 +0.1
344,641 - MMJJ_RS01790 0.78 +0.3
344,681 + MMJJ_RS01790 0.88 -0.4
344,717 + +0.8
344,729 - -0.2
344,729 - +1.5
344,729 - -0.3
344,730 + +0.7
344,730 + +1.0
344,788 - +0.3
344,788 - +0.9
344,789 + +0.8
344,848 + -0.8
344,865 + MMJJ_RS01795 0.11 +0.4
344,892 + MMJJ_RS01795 0.15 +0.0
344,892 + MMJJ_RS01795 0.15 -0.1
344,892 + MMJJ_RS01795 0.15 +0.9
344,957 + MMJJ_RS01795 0.25 +0.0
345,014 + MMJJ_RS01795 0.33 +0.3
345,112 + MMJJ_RS01795 0.48 +0.2
345,157 - MMJJ_RS01795 0.55 +0.8
345,180 + MMJJ_RS01795 0.58 +0.0
345,180 + MMJJ_RS01795 0.58 +0.5
345,182 + MMJJ_RS01795 0.58 +0.4
345,210 - MMJJ_RS01795 0.63 +0.6
345,211 + MMJJ_RS01795 0.63 -2.4
345,256 - MMJJ_RS01795 0.70 -0.4
345,261 - MMJJ_RS01795 0.70 +0.4
345,271 - MMJJ_RS01795 0.72 +0.5
345,307 - MMJJ_RS01795 0.77 +0.3
345,340 - MMJJ_RS01795 0.82 -0.0
345,340 - MMJJ_RS01795 0.82 -0.2
345,341 + MMJJ_RS01795 0.82 +0.1
345,341 + MMJJ_RS01795 0.82 -0.0
345,349 + MMJJ_RS01795 0.83 +0.6
345,349 + MMJJ_RS01795 0.83 +0.4
345,354 - MMJJ_RS01795 0.84 -0.1
345,383 + MMJJ_RS01795 0.88 -0.9
345,420 + +0.7
345,474 - -0.4
345,475 + +0.0
345,482 - -0.6
345,482 - -0.8
345,484 - +0.7
345,485 + -0.3
345,485 + -0.4
345,492 - +0.2
345,501 - +0.2
345,507 + +0.8
345,508 - +0.1
345,509 + -2.0
345,509 + -0.5
345,511 + +0.8
345,511 + -1.0
345,511 + -2.8
345,522 + +0.2
345,533 + +0.8
345,572 - -0.8
345,630 - MMJJ_RS01800 0.12 +0.5
345,630 - MMJJ_RS01800 0.12 -0.1
345,631 + MMJJ_RS01800 0.12 +0.5
345,631 + MMJJ_RS01800 0.12 -0.2
345,651 - MMJJ_RS01800 0.14 +0.6
345,651 - MMJJ_RS01800 0.14 -0.2
345,651 - MMJJ_RS01800 0.14 -1.4
345,651 - MMJJ_RS01800 0.14 -0.5
345,652 + MMJJ_RS01800 0.14 +0.3
345,652 + MMJJ_RS01800 0.14 -0.4
345,652 + MMJJ_RS01800 0.14 +0.3
345,689 - MMJJ_RS01800 0.18 -0.2
345,786 + MMJJ_RS01800 0.29 -1.2
345,793 + MMJJ_RS01800 0.30 -0.1
345,793 + MMJJ_RS01800 0.30 -0.1
345,812 - MMJJ_RS01800 0.32 +0.7
345,822 + MMJJ_RS01800 0.33 -0.4
345,822 + MMJJ_RS01800 0.33 -0.2
345,824 + MMJJ_RS01800 0.33 +0.4
345,824 + MMJJ_RS01800 0.33 +0.0
345,830 - MMJJ_RS01800 0.34 -0.6
345,903 + MMJJ_RS01800 0.42 +0.5
345,992 + MMJJ_RS01800 0.51 +1.9
345,997 - MMJJ_RS01800 0.52 +0.2
345,998 + MMJJ_RS01800 0.52 +0.7
346,007 - MMJJ_RS01800 0.53 -0.4
346,007 - MMJJ_RS01800 0.53 +0.3
346,012 - MMJJ_RS01800 0.54 +0.9
346,017 - MMJJ_RS01800 0.54 +0.5
346,041 + MMJJ_RS01800 0.57 +1.2
346,170 + MMJJ_RS01800 0.71 +0.3
346,209 + MMJJ_RS01800 0.75 -0.1
346,227 + MMJJ_RS01800 0.77 +0.6
346,227 + MMJJ_RS01800 0.77 +0.8
346,227 + MMJJ_RS01800 0.77 +1.3
346,255 - MMJJ_RS01800 0.80 -1.0
346,255 - MMJJ_RS01800 0.80 -0.7
346,256 + MMJJ_RS01800 0.81 +0.2
346,258 + MMJJ_RS01800 0.81 +0.2
346,317 + MMJJ_RS01800 0.87 +0.5
346,451 - +0.3
346,451 - +0.1
346,451 - +0.1
346,451 - +0.8
346,452 + -1.1
346,453 - -0.1

Or see this region's nucleotide sequence