Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_06203 and H281DRAFT_06204 are separated by 1 nucleotides H281DRAFT_06204 and H281DRAFT_06205 are separated by 182 nucleotides
H281DRAFT_06203: H281DRAFT_06203 - PAS domain S-box-containing protein, at 94,124 to 95,680
_06203
H281DRAFT_06204: H281DRAFT_06204 - Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily), at 95,682 to 95,999
_06204
H281DRAFT_06205: H281DRAFT_06205 - transcriptional regulator, GntR family, at 96,182 to 96,907
_06205
Position (kb) 95
96 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 94.757 kb on + strand, within H281DRAFT_06203 at 94.785 kb on - strand, within H281DRAFT_06203 at 94.785 kb on - strand, within H281DRAFT_06203 at 94.882 kb on + strand, within H281DRAFT_06203 at 94.884 kb on + strand, within H281DRAFT_06203 at 94.884 kb on + strand, within H281DRAFT_06203 at 94.884 kb on + strand at 94.884 kb on + strand, within H281DRAFT_06203 at 94.884 kb on + strand, within H281DRAFT_06203 at 94.884 kb on + strand, within H281DRAFT_06203 at 94.884 kb on + strand, within H281DRAFT_06203 at 94.884 kb on + strand, within H281DRAFT_06203 at 94.885 kb on - strand, within H281DRAFT_06203 at 95.155 kb on + strand, within H281DRAFT_06203 at 95.156 kb on - strand, within H281DRAFT_06203 at 95.209 kb on + strand, within H281DRAFT_06203 at 95.305 kb on - strand, within H281DRAFT_06203 at 95.398 kb on + strand, within H281DRAFT_06203 at 95.399 kb on - strand, within H281DRAFT_06203 at 95.579 kb on + strand at 95.638 kb on - strand at 95.638 kb on - strand at 95.638 kb on - strand at 95.808 kb on - strand, within H281DRAFT_06204 at 95.808 kb on - strand, within H281DRAFT_06204 at 95.808 kb on - strand, within H281DRAFT_06204 at 95.808 kb on - strand, within H281DRAFT_06204 at 95.809 kb on + strand, within H281DRAFT_06204 at 95.809 kb on + strand, within H281DRAFT_06204 at 95.810 kb on - strand at 95.810 kb on - strand, within H281DRAFT_06204 at 95.810 kb on - strand, within H281DRAFT_06204 at 95.810 kb on - strand, within H281DRAFT_06204 at 95.956 kb on - strand, within H281DRAFT_06204 at 96.041 kb on + strand at 96.042 kb on - strand at 96.066 kb on - strand at 96.150 kb on + strand at 96.150 kb on + strand at 96.151 kb on - strand at 96.151 kb on - strand at 96.151 kb on - strand at 96.197 kb on - strand at 96.273 kb on - strand, within H281DRAFT_06205 at 96.332 kb on + strand, within H281DRAFT_06205 at 96.382 kb on + strand, within H281DRAFT_06205 at 96.383 kb on - strand, within H281DRAFT_06205 at 96.383 kb on - strand, within H281DRAFT_06205 at 96.383 kb on - strand, within H281DRAFT_06205 at 96.413 kb on - strand, within H281DRAFT_06205 at 96.499 kb on - strand, within H281DRAFT_06205 at 96.612 kb on + strand, within H281DRAFT_06205 at 96.626 kb on + strand, within H281DRAFT_06205 at 96.626 kb on + strand, within H281DRAFT_06205 at 96.921 kb on - strand at 96.925 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM remove 94,757 + H281DRAFT_06203 0.41 -0.0 94,785 - H281DRAFT_06203 0.42 +0.3 94,785 - H281DRAFT_06203 0.42 -0.2 94,882 + H281DRAFT_06203 0.49 -0.2 94,884 + H281DRAFT_06203 0.49 +0.6 94,884 + H281DRAFT_06203 0.49 +0.9 94,884 + +0.9 94,884 + H281DRAFT_06203 0.49 -0.5 94,884 + H281DRAFT_06203 0.49 -0.2 94,884 + H281DRAFT_06203 0.49 +0.5 94,884 + H281DRAFT_06203 0.49 +0.5 94,884 + H281DRAFT_06203 0.49 -0.2 94,885 - H281DRAFT_06203 0.49 -0.1 95,155 + H281DRAFT_06203 0.66 +0.1 95,156 - H281DRAFT_06203 0.66 -0.7 95,209 + H281DRAFT_06203 0.70 +0.1 95,305 - H281DRAFT_06203 0.76 +0.9 95,398 + H281DRAFT_06203 0.82 -0.0 95,399 - H281DRAFT_06203 0.82 -0.1 95,579 + +0.7 95,638 - -0.1 95,638 - +0.2 95,638 - +0.1 95,808 - H281DRAFT_06204 0.40 -0.9 95,808 - H281DRAFT_06204 0.40 +0.2 95,808 - H281DRAFT_06204 0.40 -0.0 95,808 - H281DRAFT_06204 0.40 -0.3 95,809 + H281DRAFT_06204 0.40 -0.8 95,809 + H281DRAFT_06204 0.40 -0.3 95,810 - +2.0 95,810 - H281DRAFT_06204 0.40 -1.6 95,810 - H281DRAFT_06204 0.40 -1.8 95,810 - H281DRAFT_06204 0.40 -0.2 95,956 - H281DRAFT_06204 0.86 +0.2 96,041 + -2.4 96,042 - +0.8 96,066 - -0.4 96,150 + -0.1 96,150 + +0.2 96,151 - -0.6 96,151 - -0.1 96,151 - +0.0 96,197 - +1.5 96,273 - H281DRAFT_06205 0.13 +0.5 96,332 + H281DRAFT_06205 0.21 -0.3 96,382 + H281DRAFT_06205 0.28 -1.3 96,383 - H281DRAFT_06205 0.28 +0.0 96,383 - H281DRAFT_06205 0.28 -1.9 96,383 - H281DRAFT_06205 0.28 +0.3 96,413 - H281DRAFT_06205 0.32 +3.0 96,499 - H281DRAFT_06205 0.44 -0.7 96,612 + H281DRAFT_06205 0.59 -0.1 96,626 + H281DRAFT_06205 0.61 -0.2 96,626 + H281DRAFT_06205 0.61 -0.2 96,921 - -0.5 96,925 - +0.4
Or see this region's nucleotide sequence