Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05429 and H281DRAFT_05430 are separated by 25 nucleotides H281DRAFT_05430 and H281DRAFT_05431 overlap by 4 nucleotides H281DRAFT_05431 and H281DRAFT_05432 overlap by 8 nucleotides H281DRAFT_05432 and H281DRAFT_05433 are separated by 73 nucleotides
H281DRAFT_05429: H281DRAFT_05429 - Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit, at 4,703 to 6,001
_05429
H281DRAFT_05430: H281DRAFT_05430 - amino acid/amide ABC transporter ATP-binding protein 2, HAAT family, at 6,027 to 6,734
_05430
H281DRAFT_05431: H281DRAFT_05431 - amino acid/amide ABC transporter membrane protein 2, HAAT family /amino acid/amide ABC transporter ATP-binding protein 1, HAAT family, at 6,731 to 8,593
_05431
H281DRAFT_05432: H281DRAFT_05432 - amino acid/amide ABC transporter membrane protein 1, HAAT family, at 8,586 to 9,419
_05432
H281DRAFT_05433: H281DRAFT_05433 - amino acid/amide ABC transporter substrate-binding protein, HAAT family (TC 3.A.1.4.-), at 9,493 to 10,656
_05433
Position (kb) 6
7
8
9 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5.982 kb on + strand at 6.001 kb on + strand at 6.069 kb on - strand at 6.340 kb on + strand, within H281DRAFT_05430 at 6.340 kb on + strand, within H281DRAFT_05430 at 6.432 kb on + strand, within H281DRAFT_05430 at 6.433 kb on - strand, within H281DRAFT_05430 at 6.691 kb on + strand at 6.691 kb on + strand at 6.692 kb on - strand at 6.793 kb on - strand at 6.802 kb on + strand at 7.217 kb on + strand, within H281DRAFT_05431 at 7.217 kb on + strand, within H281DRAFT_05431 at 7.217 kb on + strand, within H281DRAFT_05431 at 7.409 kb on + strand, within H281DRAFT_05431 at 7.409 kb on + strand, within H281DRAFT_05431 at 7.526 kb on + strand, within H281DRAFT_05431 at 7.579 kb on + strand, within H281DRAFT_05431 at 7.646 kb on + strand, within H281DRAFT_05431 at 7.646 kb on + strand, within H281DRAFT_05431 at 7.991 kb on + strand, within H281DRAFT_05431 at 8.010 kb on - strand, within H281DRAFT_05431 at 8.074 kb on - strand, within H281DRAFT_05431 at 8.375 kb on - strand, within H281DRAFT_05431 at 8.378 kb on + strand, within H281DRAFT_05431 at 8.434 kb on - strand at 8.823 kb on + strand at 8.823 kb on + strand, within H281DRAFT_05432 at 8.824 kb on - strand, within H281DRAFT_05432 at 8.979 kb on - strand, within H281DRAFT_05432 at 9.257 kb on + strand, within H281DRAFT_05432 at 9.258 kb on - strand, within H281DRAFT_05432 at 9.258 kb on - strand, within H281DRAFT_05432 at 9.289 kb on + strand, within H281DRAFT_05432 at 9.338 kb on + strand at 9.357 kb on + strand at 9.358 kb on - strand at 9.374 kb on + strand at 9.374 kb on + strand at 9.454 kb on - strand at 9.454 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM remove 5,982 + +0.1 6,001 + -0.1 6,069 - +0.6 6,340 + H281DRAFT_05430 0.44 -1.1 6,340 + H281DRAFT_05430 0.44 -0.4 6,432 + H281DRAFT_05430 0.57 -0.1 6,433 - H281DRAFT_05430 0.57 -0.2 6,691 + +0.3 6,691 + +0.2 6,692 - -0.0 6,793 - -0.0 6,802 + +0.3 7,217 + H281DRAFT_05431 0.26 +0.1 7,217 + H281DRAFT_05431 0.26 -0.4 7,217 + H281DRAFT_05431 0.26 +0.1 7,409 + H281DRAFT_05431 0.36 +0.7 7,409 + H281DRAFT_05431 0.36 -0.7 7,526 + H281DRAFT_05431 0.43 +0.1 7,579 + H281DRAFT_05431 0.46 -0.3 7,646 + H281DRAFT_05431 0.49 -1.2 7,646 + H281DRAFT_05431 0.49 -1.9 7,991 + H281DRAFT_05431 0.68 +0.8 8,010 - H281DRAFT_05431 0.69 +1.1 8,074 - H281DRAFT_05431 0.72 -1.0 8,375 - H281DRAFT_05431 0.88 -0.3 8,378 + H281DRAFT_05431 0.88 +0.7 8,434 - +0.1 8,823 + +3.2 8,823 + H281DRAFT_05432 0.28 -0.2 8,824 - H281DRAFT_05432 0.29 -0.1 8,979 - H281DRAFT_05432 0.47 -0.0 9,257 + H281DRAFT_05432 0.80 -0.3 9,258 - H281DRAFT_05432 0.81 +0.2 9,258 - H281DRAFT_05432 0.81 +0.4 9,289 + H281DRAFT_05432 0.84 -0.8 9,338 + +0.9 9,357 + +2.2 9,358 - -0.2 9,374 + +0.3 9,374 + -0.1 9,454 - +0.2 9,454 - +0.4
Or see this region's nucleotide sequence