Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05332 and H281DRAFT_05333 overlap by 4 nucleotides H281DRAFT_05333 and H281DRAFT_05334 are separated by 70 nucleotides H281DRAFT_05334 and H281DRAFT_05335 are separated by 49 nucleotides
H281DRAFT_05332: H281DRAFT_05332 - Pimeloyl-ACP methyl ester carboxylesterase, at 82,370 to 83,314
_05332
H281DRAFT_05333: H281DRAFT_05333 - hypothetical protein, at 83,311 to 84,192
_05333
H281DRAFT_05334: H281DRAFT_05334 - Short-chain dehydrogenase, at 84,263 to 85,171
_05334
H281DRAFT_05335: H281DRAFT_05335 - Predicted flavoprotein CzcO associated with the cation diffusion facilitator CzcD, at 85,221 to 86,816
_05335
Position (kb) 84
85
86 Strain fitness (log2 ratio) -1
0
1 at 83.516 kb on + strand, within H281DRAFT_05333 at 83.641 kb on - strand, within H281DRAFT_05333 at 83.651 kb on + strand, within H281DRAFT_05333 at 83.680 kb on - strand, within H281DRAFT_05333 at 83.817 kb on - strand, within H281DRAFT_05333 at 83.948 kb on + strand, within H281DRAFT_05333 at 83.967 kb on + strand, within H281DRAFT_05333 at 84.169 kb on + strand at 84.743 kb on - strand, within H281DRAFT_05334 at 85.212 kb on - strand at 85.483 kb on + strand, within H281DRAFT_05335 at 85.888 kb on + strand, within H281DRAFT_05335
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM remove 83,516 + H281DRAFT_05333 0.23 -0.1 83,641 - H281DRAFT_05333 0.37 -0.1 83,651 + H281DRAFT_05333 0.39 -0.6 83,680 - H281DRAFT_05333 0.42 -0.2 83,817 - H281DRAFT_05333 0.57 +0.3 83,948 + H281DRAFT_05333 0.72 -1.2 83,967 + H281DRAFT_05333 0.74 +0.5 84,169 + -0.3 84,743 - H281DRAFT_05334 0.53 -0.3 85,212 - -0.1 85,483 + H281DRAFT_05335 0.16 +0.2 85,888 + H281DRAFT_05335 0.42 +0.1
Or see this region's nucleotide sequence