Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05138

Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05137 and H281DRAFT_05138 are separated by 28 nucleotidesH281DRAFT_05138 and H281DRAFT_05139 are separated by 168 nucleotidesH281DRAFT_05139 and H281DRAFT_05140 are separated by 91 nucleotides H281DRAFT_05137: H281DRAFT_05137 - Signal transduction histidine kinase, at 89,881 to 92,589 _05137 H281DRAFT_05138: H281DRAFT_05138 - Predicted amino acid dehydrogenase, at 92,618 to 93,832 _05138 H281DRAFT_05139: H281DRAFT_05139 - Copper binding protein CusF, at 94,001 to 94,258 _05139 H281DRAFT_05140: H281DRAFT_05140 - Thiosulfate reductase cytochrome b subunit, at 94,350 to 94,997 _05140 Position (kb) 92 93 94Strain fitness (log2 ratio) -1 0 1 2at 91.769 kb on + strand, within H281DRAFT_05137at 91.769 kb on + strand, within H281DRAFT_05137at 92.358 kb on - strandat 92.474 kb on + strandat 92.475 kb on - strandat 92.475 kb on - strandat 92.584 kb on + strandat 92.585 kb on - strandat 92.609 kb on - strandat 92.627 kb on - strandat 92.812 kb on + strand, within H281DRAFT_05138at 92.812 kb on + strand, within H281DRAFT_05138at 92.813 kb on - strand, within H281DRAFT_05138at 92.814 kb on + strand, within H281DRAFT_05138at 92.815 kb on - strand, within H281DRAFT_05138at 92.815 kb on - strand, within H281DRAFT_05138at 92.890 kb on + strand, within H281DRAFT_05138at 92.890 kb on + strand, within H281DRAFT_05138at 92.890 kb on + strand, within H281DRAFT_05138at 92.891 kb on - strand, within H281DRAFT_05138at 92.891 kb on - strand, within H281DRAFT_05138at 92.892 kb on + strand, within H281DRAFT_05138at 92.892 kb on + strand, within H281DRAFT_05138at 92.893 kb on - strand, within H281DRAFT_05138at 92.893 kb on - strand, within H281DRAFT_05138at 92.894 kb on + strand, within H281DRAFT_05138at 92.895 kb on - strandat 92.895 kb on - strand, within H281DRAFT_05138at 92.899 kb on + strand, within H281DRAFT_05138at 92.899 kb on + strand, within H281DRAFT_05138at 92.899 kb on + strand, within H281DRAFT_05138at 92.899 kb on + strandat 93.067 kb on + strand, within H281DRAFT_05138at 93.068 kb on - strand, within H281DRAFT_05138at 93.068 kb on - strand, within H281DRAFT_05138at 93.068 kb on - strand, within H281DRAFT_05138at 93.190 kb on - strand, within H281DRAFT_05138at 93.190 kb on - strand, within H281DRAFT_05138at 93.375 kb on + strand, within H281DRAFT_05138at 93.375 kb on + strand, within H281DRAFT_05138at 93.376 kb on - strand, within H281DRAFT_05138at 93.376 kb on - strand, within H281DRAFT_05138at 93.387 kb on + strand, within H281DRAFT_05138at 93.388 kb on - strand, within H281DRAFT_05138at 93.652 kb on + strand, within H281DRAFT_05138at 93.816 kb on + strandat 93.817 kb on - strandat 93.922 kb on + strandat 94.334 kb on + strandat 94.335 kb on - strandat 94.411 kb on - strandat 94.626 kb on + strand, within H281DRAFT_05140at 94.626 kb on + strand, within H281DRAFT_05140at 94.626 kb on + strand, within H281DRAFT_05140at 94.627 kb on - strand, within H281DRAFT_05140at 94.753 kb on - strand, within H281DRAFT_05140at 94.776 kb on + strandat 94.776 kb on + strand, within H281DRAFT_05140

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Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM
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91,769 + H281DRAFT_05137 0.70 -0.7
91,769 + H281DRAFT_05137 0.70 -0.1
92,358 - +1.2
92,474 + +0.9
92,475 - +0.0
92,475 - +0.9
92,584 + +1.3
92,585 - +0.1
92,609 - +0.7
92,627 - -0.3
92,812 + H281DRAFT_05138 0.16 -0.2
92,812 + H281DRAFT_05138 0.16 +0.3
92,813 - H281DRAFT_05138 0.16 +0.4
92,814 + H281DRAFT_05138 0.16 -0.1
92,815 - H281DRAFT_05138 0.16 +0.1
92,815 - H281DRAFT_05138 0.16 +0.5
92,890 + H281DRAFT_05138 0.22 +0.5
92,890 + H281DRAFT_05138 0.22 +0.7
92,890 + H281DRAFT_05138 0.22 +0.7
92,891 - H281DRAFT_05138 0.22 +0.1
92,891 - H281DRAFT_05138 0.22 -0.2
92,892 + H281DRAFT_05138 0.23 +1.2
92,892 + H281DRAFT_05138 0.23 +2.1
92,893 - H281DRAFT_05138 0.23 +0.4
92,893 - H281DRAFT_05138 0.23 +0.4
92,894 + H281DRAFT_05138 0.23 -0.6
92,895 - -0.1
92,895 - H281DRAFT_05138 0.23 +0.6
92,899 + H281DRAFT_05138 0.23 +0.3
92,899 + H281DRAFT_05138 0.23 +1.0
92,899 + H281DRAFT_05138 0.23 -1.2
92,899 + +2.5
93,067 + H281DRAFT_05138 0.37 -0.4
93,068 - H281DRAFT_05138 0.37 +0.1
93,068 - H281DRAFT_05138 0.37 +0.5
93,068 - H281DRAFT_05138 0.37 -0.0
93,190 - H281DRAFT_05138 0.47 -0.3
93,190 - H281DRAFT_05138 0.47 -0.3
93,375 + H281DRAFT_05138 0.62 +1.7
93,375 + H281DRAFT_05138 0.62 +0.2
93,376 - H281DRAFT_05138 0.62 -0.7
93,376 - H281DRAFT_05138 0.62 -0.3
93,387 + H281DRAFT_05138 0.63 -0.3
93,388 - H281DRAFT_05138 0.63 +0.2
93,652 + H281DRAFT_05138 0.85 +0.1
93,816 + +0.8
93,817 - +0.7
93,922 + +0.4
94,334 + -0.1
94,335 - -0.7
94,411 - +0.6
94,626 + H281DRAFT_05140 0.43 +0.4
94,626 + H281DRAFT_05140 0.43 -0.4
94,626 + H281DRAFT_05140 0.43 -1.1
94,627 - H281DRAFT_05140 0.43 -1.1
94,753 - H281DRAFT_05140 0.62 +0.3
94,776 + +1.5
94,776 + H281DRAFT_05140 0.66 -0.1

Or see this region's nucleotide sequence