Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05137

Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05136 and H281DRAFT_05137 are separated by 10 nucleotidesH281DRAFT_05137 and H281DRAFT_05138 are separated by 28 nucleotides H281DRAFT_05136: H281DRAFT_05136 - response regulator receiver sensor signal transduction histidine kinase (EC 2.7.13.3), at 88,710 to 89,870 _05136 H281DRAFT_05137: H281DRAFT_05137 - Signal transduction histidine kinase, at 89,881 to 92,589 _05137 H281DRAFT_05138: H281DRAFT_05138 - Predicted amino acid dehydrogenase, at 92,618 to 93,832 _05138 Position (kb) 89 90 91 92 93Strain fitness (log2 ratio) -1 0 1 2at 89.095 kb on - strandat 89.233 kb on - strand, within H281DRAFT_05136at 89.233 kb on - strand, within H281DRAFT_05136at 89.233 kb on - strand, within H281DRAFT_05136at 89.270 kb on + strand, within H281DRAFT_05136at 89.296 kb on - strand, within H281DRAFT_05136at 89.489 kb on + strand, within H281DRAFT_05136at 89.883 kb on - strandat 89.929 kb on - strandat 89.958 kb on + strandat 89.958 kb on + strandat 90.113 kb on + strandat 90.113 kb on + strandat 90.114 kb on - strandat 90.527 kb on + strand, within H281DRAFT_05137at 90.527 kb on + strand, within H281DRAFT_05137at 90.528 kb on - strand, within H281DRAFT_05137at 90.528 kb on - strand, within H281DRAFT_05137at 90.528 kb on - strand, within H281DRAFT_05137at 90.528 kb on - strand, within H281DRAFT_05137at 90.810 kb on - strand, within H281DRAFT_05137at 90.834 kb on - strand, within H281DRAFT_05137at 91.031 kb on + strand, within H281DRAFT_05137at 91.508 kb on - strand, within H281DRAFT_05137at 91.769 kb on + strand, within H281DRAFT_05137at 91.769 kb on + strand, within H281DRAFT_05137at 92.358 kb on - strandat 92.474 kb on + strandat 92.475 kb on - strandat 92.475 kb on - strandat 92.584 kb on + strandat 92.585 kb on - strandat 92.609 kb on - strandat 92.627 kb on - strandat 92.812 kb on + strand, within H281DRAFT_05138at 92.812 kb on + strand, within H281DRAFT_05138at 92.813 kb on - strand, within H281DRAFT_05138at 92.814 kb on + strand, within H281DRAFT_05138at 92.815 kb on - strand, within H281DRAFT_05138at 92.815 kb on - strand, within H281DRAFT_05138at 92.890 kb on + strand, within H281DRAFT_05138at 92.890 kb on + strand, within H281DRAFT_05138at 92.890 kb on + strand, within H281DRAFT_05138at 92.891 kb on - strand, within H281DRAFT_05138at 92.891 kb on - strand, within H281DRAFT_05138at 92.892 kb on + strand, within H281DRAFT_05138at 92.892 kb on + strand, within H281DRAFT_05138at 92.893 kb on - strand, within H281DRAFT_05138at 92.893 kb on - strand, within H281DRAFT_05138at 92.894 kb on + strand, within H281DRAFT_05138at 92.895 kb on - strandat 92.895 kb on - strand, within H281DRAFT_05138at 92.899 kb on + strand, within H281DRAFT_05138at 92.899 kb on + strand, within H281DRAFT_05138at 92.899 kb on + strand, within H281DRAFT_05138at 92.899 kb on + strandat 93.067 kb on + strand, within H281DRAFT_05138at 93.068 kb on - strand, within H281DRAFT_05138at 93.068 kb on - strand, within H281DRAFT_05138at 93.068 kb on - strand, within H281DRAFT_05138at 93.190 kb on - strand, within H281DRAFT_05138at 93.190 kb on - strand, within H281DRAFT_05138at 93.375 kb on + strand, within H281DRAFT_05138at 93.375 kb on + strand, within H281DRAFT_05138at 93.376 kb on - strand, within H281DRAFT_05138at 93.376 kb on - strand, within H281DRAFT_05138at 93.387 kb on + strand, within H281DRAFT_05138at 93.388 kb on - strand, within H281DRAFT_05138

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Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM
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89,095 - +1.9
89,233 - H281DRAFT_05136 0.45 +1.5
89,233 - H281DRAFT_05136 0.45 -0.4
89,233 - H281DRAFT_05136 0.45 +0.3
89,270 + H281DRAFT_05136 0.48 +0.2
89,296 - H281DRAFT_05136 0.50 -0.1
89,489 + H281DRAFT_05136 0.67 +0.4
89,883 - +0.2
89,929 - -0.2
89,958 + +1.8
89,958 + +0.4
90,113 + +0.9
90,113 + +0.0
90,114 - -0.1
90,527 + H281DRAFT_05137 0.24 +0.3
90,527 + H281DRAFT_05137 0.24 +0.3
90,528 - H281DRAFT_05137 0.24 -0.4
90,528 - H281DRAFT_05137 0.24 -0.1
90,528 - H281DRAFT_05137 0.24 +1.1
90,528 - H281DRAFT_05137 0.24 +0.7
90,810 - H281DRAFT_05137 0.34 +0.1
90,834 - H281DRAFT_05137 0.35 +1.0
91,031 + H281DRAFT_05137 0.42 -0.6
91,508 - H281DRAFT_05137 0.60 +1.1
91,769 + H281DRAFT_05137 0.70 -0.7
91,769 + H281DRAFT_05137 0.70 -0.1
92,358 - +1.2
92,474 + +0.9
92,475 - +0.0
92,475 - +0.9
92,584 + +1.3
92,585 - +0.1
92,609 - +0.7
92,627 - -0.3
92,812 + H281DRAFT_05138 0.16 -0.2
92,812 + H281DRAFT_05138 0.16 +0.3
92,813 - H281DRAFT_05138 0.16 +0.4
92,814 + H281DRAFT_05138 0.16 -0.1
92,815 - H281DRAFT_05138 0.16 +0.1
92,815 - H281DRAFT_05138 0.16 +0.5
92,890 + H281DRAFT_05138 0.22 +0.5
92,890 + H281DRAFT_05138 0.22 +0.7
92,890 + H281DRAFT_05138 0.22 +0.7
92,891 - H281DRAFT_05138 0.22 +0.1
92,891 - H281DRAFT_05138 0.22 -0.2
92,892 + H281DRAFT_05138 0.23 +1.2
92,892 + H281DRAFT_05138 0.23 +2.1
92,893 - H281DRAFT_05138 0.23 +0.4
92,893 - H281DRAFT_05138 0.23 +0.4
92,894 + H281DRAFT_05138 0.23 -0.6
92,895 - -0.1
92,895 - H281DRAFT_05138 0.23 +0.6
92,899 + H281DRAFT_05138 0.23 +0.3
92,899 + H281DRAFT_05138 0.23 +1.0
92,899 + H281DRAFT_05138 0.23 -1.2
92,899 + +2.5
93,067 + H281DRAFT_05138 0.37 -0.4
93,068 - H281DRAFT_05138 0.37 +0.1
93,068 - H281DRAFT_05138 0.37 +0.5
93,068 - H281DRAFT_05138 0.37 -0.0
93,190 - H281DRAFT_05138 0.47 -0.3
93,190 - H281DRAFT_05138 0.47 -0.3
93,375 + H281DRAFT_05138 0.62 +1.7
93,375 + H281DRAFT_05138 0.62 +0.2
93,376 - H281DRAFT_05138 0.62 -0.7
93,376 - H281DRAFT_05138 0.62 -0.3
93,387 + H281DRAFT_05138 0.63 -0.3
93,388 - H281DRAFT_05138 0.63 +0.2

Or see this region's nucleotide sequence