Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_05130 and H281DRAFT_05131 are separated by 80 nucleotides H281DRAFT_05131 and H281DRAFT_05132 are separated by 2 nucleotides
H281DRAFT_05130: H281DRAFT_05130 - 3-ketoacyl-CoA thiolase, at 79,489 to 80,790
_05130
H281DRAFT_05131: H281DRAFT_05131 - Acyl dehydratase, at 80,871 to 81,806
_05131
H281DRAFT_05132: H281DRAFT_05132 - 3-oxoacyl-[acyl-carrier protein] reductase, at 81,809 to 83,260
_05132
Position (kb) 80
81
82 Strain fitness (log2 ratio) -2
-1
0
1
2 at 80.526 kb on - strand, within H281DRAFT_05130 at 80.708 kb on + strand at 80.812 kb on + strand at 80.812 kb on + strand at 81.154 kb on + strand, within H281DRAFT_05131 at 81.416 kb on - strand, within H281DRAFT_05131 at 81.535 kb on + strand, within H281DRAFT_05131 at 81.810 kb on + strand at 81.810 kb on + strand at 81.811 kb on - strand at 81.811 kb on - strand at 81.811 kb on - strand at 82.096 kb on - strand, within H281DRAFT_05132 at 82.650 kb on + strand, within H281DRAFT_05132 at 82.650 kb on + strand, within H281DRAFT_05132 at 82.650 kb on + strand, within H281DRAFT_05132 at 82.651 kb on - strand, within H281DRAFT_05132 at 82.651 kb on - strand, within H281DRAFT_05132 at 82.720 kb on - strand, within H281DRAFT_05132
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM remove 80,526 - H281DRAFT_05130 0.80 -2.2 80,708 + -0.4 80,812 + +0.4 80,812 + +0.2 81,154 + H281DRAFT_05131 0.30 -0.7 81,416 - H281DRAFT_05131 0.58 -0.6 81,535 + H281DRAFT_05131 0.71 -0.7 81,810 + +0.3 81,810 + -1.5 81,811 - +0.1 81,811 - +2.1 81,811 - +0.4 82,096 - H281DRAFT_05132 0.20 -0.0 82,650 + H281DRAFT_05132 0.58 -0.0 82,650 + H281DRAFT_05132 0.58 -0.9 82,650 + H281DRAFT_05132 0.58 +0.4 82,651 - H281DRAFT_05132 0.58 -0.3 82,651 - H281DRAFT_05132 0.58 +0.6 82,720 - H281DRAFT_05132 0.63 -0.0
Or see this region's nucleotide sequence