Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04868 and H281DRAFT_04869 are separated by 15 nucleotides H281DRAFT_04869 and H281DRAFT_04870 are separated by 84 nucleotides H281DRAFT_04870 and H281DRAFT_04871 are separated by 2 nucleotides
H281DRAFT_04868: H281DRAFT_04868 - formimidoylglutamate deiminase (EC 3.5.3.13), at 10,528 to 11,925
_04868
H281DRAFT_04869: H281DRAFT_04869 - imidazolonepropionase, at 11,941 to 13,170
_04869
H281DRAFT_04870: H281DRAFT_04870 - hypothetical protein, at 13,255 to 13,935
_04870
H281DRAFT_04871: H281DRAFT_04871 - urocanate hydratase, at 13,938 to 15,626
_04871
Position (kb) 11
12
13
14 Strain fitness (log2 ratio) -1
0
1
2
3 at 10.970 kb on + strand, within H281DRAFT_04868 at 10.970 kb on + strand, within H281DRAFT_04868 at 10.971 kb on - strand, within H281DRAFT_04868 at 11.361 kb on + strand at 11.362 kb on - strand, within H281DRAFT_04868 at 11.364 kb on + strand, within H281DRAFT_04868 at 11.364 kb on + strand, within H281DRAFT_04868 at 11.365 kb on - strand, within H281DRAFT_04868 at 11.535 kb on - strand, within H281DRAFT_04868 at 11.582 kb on + strand, within H281DRAFT_04868 at 11.583 kb on - strand, within H281DRAFT_04868 at 12.312 kb on - strand, within H281DRAFT_04869 at 12.678 kb on - strand, within H281DRAFT_04869 at 13.199 kb on + strand at 13.200 kb on - strand at 13.855 kb on + strand, within H281DRAFT_04870 at 13.882 kb on - strand at 13.882 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM remove 10,970 + H281DRAFT_04868 0.32 +0.9 10,970 + H281DRAFT_04868 0.32 -0.2 10,971 - H281DRAFT_04868 0.32 +3.6 11,361 + +0.6 11,362 - H281DRAFT_04868 0.60 +1.8 11,364 + H281DRAFT_04868 0.60 +0.4 11,364 + H281DRAFT_04868 0.60 +0.2 11,365 - H281DRAFT_04868 0.60 -0.6 11,535 - H281DRAFT_04868 0.72 +0.4 11,582 + H281DRAFT_04868 0.75 -0.1 11,583 - H281DRAFT_04868 0.75 +0.6 12,312 - H281DRAFT_04869 0.30 +2.3 12,678 - H281DRAFT_04869 0.60 -1.4 13,199 + -0.2 13,200 - -0.5 13,855 + H281DRAFT_04870 0.88 +3.1 13,882 - +0.8 13,882 - +0.6
Or see this region's nucleotide sequence