Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_04112 and H281DRAFT_04113 are separated by 208 nucleotides H281DRAFT_04113 and H281DRAFT_04114 are separated by 171 nucleotides
H281DRAFT_04112: H281DRAFT_04112 - 3-deoxy-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase), at 222,933 to 223,733
_04112
H281DRAFT_04113: H281DRAFT_04113 - Adenylate kinase, at 223,942 to 224,607
_04113
H281DRAFT_04114: H281DRAFT_04114 - NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family, at 224,779 to 225,537
_04114
Position (kb) 223
224
225 Strain fitness (log2 ratio) -1
0
1 at 223.720 kb on + strand at 223.752 kb on + strand at 223.752 kb on + strand at 223.925 kb on + strand at 223.925 kb on + strand at 224.605 kb on + strand at 224.606 kb on - strand at 224.606 kb on - strand at 224.617 kb on + strand at 224.618 kb on - strand at 224.718 kb on + strand at 224.724 kb on + strand at 224.725 kb on - strand at 224.750 kb on + strand at 224.750 kb on + strand at 224.751 kb on - strand at 224.751 kb on - strand at 224.751 kb on - strand at 224.754 kb on + strand at 224.754 kb on + strand at 224.754 kb on + strand at 224.754 kb on + strand at 224.754 kb on + strand at 224.755 kb on - strand at 224.755 kb on - strand at 224.755 kb on - strand at 224.755 kb on - strand at 224.755 kb on - strand at 224.755 kb on - strand at 224.755 kb on - strand at 224.798 kb on + strand at 224.798 kb on + strand at 224.799 kb on - strand at 224.808 kb on + strand at 225.223 kb on + strand, within H281DRAFT_04114 at 225.224 kb on - strand, within H281DRAFT_04114 at 225.251 kb on - strand, within H281DRAFT_04114 at 225.445 kb on + strand, within H281DRAFT_04114 at 225.445 kb on + strand, within H281DRAFT_04114 at 225.535 kb on + strand at 225.536 kb on - strand at 225.536 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM remove 223,720 + -0.2 223,752 + -0.2 223,752 + -0.4 223,925 + -0.1 223,925 + +0.3 224,605 + +0.6 224,606 - +0.5 224,606 - +0.3 224,617 + -1.2 224,618 - +0.9 224,718 + -0.8 224,724 + -0.5 224,725 - +0.2 224,750 + -0.3 224,750 + +0.4 224,751 - +0.6 224,751 - +0.9 224,751 - +0.1 224,754 + +0.5 224,754 + -0.5 224,754 + +1.3 224,754 + -0.2 224,754 + +1.5 224,755 - -0.3 224,755 - +0.2 224,755 - +0.1 224,755 - -0.2 224,755 - +0.7 224,755 - +0.6 224,755 - +0.0 224,798 + +1.3 224,798 + +0.1 224,799 - -0.4 224,808 + +1.5 225,223 + H281DRAFT_04114 0.58 -0.3 225,224 - H281DRAFT_04114 0.59 +1.1 225,251 - H281DRAFT_04114 0.62 +1.5 225,445 + H281DRAFT_04114 0.88 +1.5 225,445 + H281DRAFT_04114 0.88 -0.4 225,535 + +0.7 225,536 - -1.0 225,536 - +0.2
Or see this region's nucleotide sequence