Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03572 and H281DRAFT_03573 are separated by 118 nucleotides H281DRAFT_03573 and H281DRAFT_03574 are separated by 347 nucleotides
H281DRAFT_03572: H281DRAFT_03572 - Crotonobetainyl-CoA:carnitine CoA-transferase CaiB, at 79,699 to 80,892
_03572
H281DRAFT_03573: H281DRAFT_03573 - DNA-binding transcriptional regulator, LysR family, at 81,011 to 81,949
_03573
H281DRAFT_03574: H281DRAFT_03574 - transcriptional regulator, AraC family with amidase-like domain, at 82,297 to 83,259
_03574
Position (kb) 81
82 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 80.071 kb on + strand, within H281DRAFT_03572 at 80.072 kb on - strand, within H281DRAFT_03572 at 80.159 kb on + strand, within H281DRAFT_03572 at 80.714 kb on + strand, within H281DRAFT_03572 at 80.906 kb on - strand at 81.207 kb on - strand, within H281DRAFT_03573 at 81.307 kb on + strand, within H281DRAFT_03573 at 81.307 kb on + strand, within H281DRAFT_03573 at 81.489 kb on - strand, within H281DRAFT_03573 at 81.648 kb on + strand, within H281DRAFT_03573 at 81.885 kb on + strand at 81.886 kb on - strand at 81.913 kb on + strand at 81.914 kb on - strand at 81.978 kb on + strand at 81.979 kb on - strand at 82.129 kb on + strand at 82.129 kb on + strand at 82.130 kb on - strand at 82.610 kb on - strand, within H281DRAFT_03574 at 82.735 kb on + strand, within H281DRAFT_03574 at 82.912 kb on + strand, within H281DRAFT_03574
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM remove 80,071 + H281DRAFT_03572 0.31 -1.4 80,072 - H281DRAFT_03572 0.31 +0.1 80,159 + H281DRAFT_03572 0.39 -0.5 80,714 + H281DRAFT_03572 0.85 +0.0 80,906 - +0.3 81,207 - H281DRAFT_03573 0.21 -0.0 81,307 + H281DRAFT_03573 0.32 -0.4 81,307 + H281DRAFT_03573 0.32 +0.6 81,489 - H281DRAFT_03573 0.51 +0.2 81,648 + H281DRAFT_03573 0.68 +0.4 81,885 + -0.7 81,886 - -0.3 81,913 + +0.2 81,914 - -0.5 81,978 + -0.7 81,979 - +0.4 82,129 + +0.2 82,129 + -0.2 82,130 - +3.9 82,610 - H281DRAFT_03574 0.33 -1.1 82,735 + H281DRAFT_03574 0.45 +0.9 82,912 + H281DRAFT_03574 0.64 -1.2
Or see this region's nucleotide sequence