Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03468 and H281DRAFT_03469 are separated by 82 nucleotides H281DRAFT_03469 and H281DRAFT_03470 are separated by 308 nucleotides H281DRAFT_03470 and H281DRAFT_03471 overlap by 4 nucleotides
H281DRAFT_03468: H281DRAFT_03468 - small multidrug resistance family-3 protein, at 551,720 to 552,040
_03468
H281DRAFT_03469: H281DRAFT_03469 - hypothetical protein, at 552,123 to 552,632
_03469
H281DRAFT_03470: H281DRAFT_03470 - kumamolisin. Serine peptidase. MEROPS family S53, at 552,941 to 554,560
_03470
H281DRAFT_03471: H281DRAFT_03471 - Carboxypeptidase C (cathepsin A), at 554,557 to 556,212
_03471
Position (kb) 552
553
554
555 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 551.965 kb on + strand, within H281DRAFT_03468 at 551.965 kb on + strand, within H281DRAFT_03468 at 551.966 kb on - strand, within H281DRAFT_03468 at 552.142 kb on + strand at 552.238 kb on + strand, within H281DRAFT_03469 at 552.238 kb on + strand, within H281DRAFT_03469 at 552.338 kb on - strand, within H281DRAFT_03469 at 552.338 kb on - strand, within H281DRAFT_03469 at 552.460 kb on + strand, within H281DRAFT_03469 at 552.460 kb on + strand, within H281DRAFT_03469 at 552.460 kb on + strand, within H281DRAFT_03469 at 552.460 kb on + strand, within H281DRAFT_03469 at 552.461 kb on - strand, within H281DRAFT_03469 at 552.461 kb on - strand, within H281DRAFT_03469 at 552.461 kb on - strand, within H281DRAFT_03469 at 552.461 kb on - strand, within H281DRAFT_03469 at 552.617 kb on - strand at 552.684 kb on - strand at 552.684 kb on - strand at 552.684 kb on - strand at 552.684 kb on - strand at 552.981 kb on + strand at 552.982 kb on - strand at 553.149 kb on - strand, within H281DRAFT_03470 at 553.499 kb on + strand, within H281DRAFT_03470 at 553.586 kb on + strand, within H281DRAFT_03470 at 553.586 kb on + strand, within H281DRAFT_03470 at 553.691 kb on - strand, within H281DRAFT_03470 at 554.007 kb on - strand, within H281DRAFT_03470 at 554.007 kb on - strand, within H281DRAFT_03470 at 554.010 kb on + strand, within H281DRAFT_03470 at 554.011 kb on - strand, within H281DRAFT_03470 at 554.372 kb on + strand, within H281DRAFT_03470 at 554.373 kb on - strand, within H281DRAFT_03470 at 554.374 kb on + strand, within H281DRAFT_03470 at 554.375 kb on - strand, within H281DRAFT_03470 at 554.496 kb on + strand at 554.498 kb on + strand at 554.498 kb on + strand at 554.498 kb on + strand at 554.498 kb on + strand at 554.498 kb on + strand at 554.498 kb on + strand at 554.498 kb on + strand at 554.499 kb on - strand at 554.499 kb on - strand at 554.499 kb on - strand at 554.499 kb on - strand at 554.499 kb on - strand at 554.500 kb on + strand at 554.500 kb on + strand at 554.500 kb on + strand at 554.500 kb on + strand at 554.500 kb on + strand at 554.501 kb on - strand at 554.501 kb on - strand at 554.501 kb on - strand at 554.683 kb on + strand at 554.776 kb on + strand, within H281DRAFT_03471 at 554.777 kb on - strand, within H281DRAFT_03471 at 554.845 kb on + strand, within H281DRAFT_03471 at 554.846 kb on - strand, within H281DRAFT_03471 at 554.902 kb on + strand, within H281DRAFT_03471 at 554.903 kb on - strand, within H281DRAFT_03471 at 554.903 kb on - strand, within H281DRAFT_03471 at 555.011 kb on + strand, within H281DRAFT_03471 at 555.012 kb on - strand, within H281DRAFT_03471 at 555.220 kb on + strand, within H281DRAFT_03471 at 555.234 kb on + strand, within H281DRAFT_03471 at 555.289 kb on - strand, within H281DRAFT_03471 at 555.289 kb on - strand, within H281DRAFT_03471
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM remove 551,965 + H281DRAFT_03468 0.76 +0.2 551,965 + H281DRAFT_03468 0.76 -0.3 551,966 - H281DRAFT_03468 0.77 -0.7 552,142 + +1.3 552,238 + H281DRAFT_03469 0.23 -0.8 552,238 + H281DRAFT_03469 0.23 +1.3 552,338 - H281DRAFT_03469 0.42 -2.3 552,338 - H281DRAFT_03469 0.42 +0.5 552,460 + H281DRAFT_03469 0.66 -0.2 552,460 + H281DRAFT_03469 0.66 -0.0 552,460 + H281DRAFT_03469 0.66 -1.4 552,460 + H281DRAFT_03469 0.66 +0.1 552,461 - H281DRAFT_03469 0.66 +0.3 552,461 - H281DRAFT_03469 0.66 +0.3 552,461 - H281DRAFT_03469 0.66 +0.2 552,461 - H281DRAFT_03469 0.66 -0.1 552,617 - +0.3 552,684 - -0.3 552,684 - +0.9 552,684 - +0.5 552,684 - -0.1 552,981 + -2.4 552,982 - +0.2 553,149 - H281DRAFT_03470 0.13 -0.4 553,499 + H281DRAFT_03470 0.34 -0.3 553,586 + H281DRAFT_03470 0.40 -0.4 553,586 + H281DRAFT_03470 0.40 -0.4 553,691 - H281DRAFT_03470 0.46 -0.1 554,007 - H281DRAFT_03470 0.66 -0.1 554,007 - H281DRAFT_03470 0.66 -0.6 554,010 + H281DRAFT_03470 0.66 -0.4 554,011 - H281DRAFT_03470 0.66 +0.1 554,372 + H281DRAFT_03470 0.88 +0.2 554,373 - H281DRAFT_03470 0.88 -3.2 554,374 + H281DRAFT_03470 0.88 -0.9 554,375 - H281DRAFT_03470 0.89 +0.5 554,496 + -0.7 554,498 + -0.4 554,498 + -0.4 554,498 + +0.7 554,498 + +0.2 554,498 + +0.6 554,498 + -0.1 554,498 + +0.7 554,499 - -0.0 554,499 - -0.2 554,499 - -0.6 554,499 - +0.8 554,499 - +0.7 554,500 + -0.5 554,500 + -0.6 554,500 + +0.5 554,500 + +0.2 554,500 + -0.4 554,501 - -1.3 554,501 - +0.3 554,501 - -0.9 554,683 + -0.4 554,776 + H281DRAFT_03471 0.13 +1.0 554,777 - H281DRAFT_03471 0.13 +0.2 554,845 + H281DRAFT_03471 0.17 -0.6 554,846 - H281DRAFT_03471 0.17 -0.2 554,902 + H281DRAFT_03471 0.21 -0.6 554,903 - H281DRAFT_03471 0.21 +0.8 554,903 - H281DRAFT_03471 0.21 +1.4 555,011 + H281DRAFT_03471 0.27 -0.7 555,012 - H281DRAFT_03471 0.27 +0.3 555,220 + H281DRAFT_03471 0.40 +0.2 555,234 + H281DRAFT_03471 0.41 +0.4 555,289 - H281DRAFT_03471 0.44 +0.8 555,289 - H281DRAFT_03471 0.44 +0.8
Or see this region's nucleotide sequence