Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_02819 and H281DRAFT_02820 overlap by 4 nucleotides H281DRAFT_02820 and H281DRAFT_02821 are separated by 143 nucleotides
H281DRAFT_02819: H281DRAFT_02819 - DNA ligase-1, at 410,071 to 411,756
_02819
H281DRAFT_02820: H281DRAFT_02820 - putative mRNA 3-end processing factor, at 411,753 to 412,916
_02820
H281DRAFT_02821: H281DRAFT_02821 - YihY family inner membrane protein, at 413,060 to 413,962
_02821
Position (kb) 411
412
413 Strain fitness (log2 ratio) -1
0
1 at 411.252 kb on + strand, within H281DRAFT_02819 at 411.253 kb on - strand, within H281DRAFT_02819 at 411.378 kb on - strand, within H281DRAFT_02819 at 411.677 kb on + strand at 411.734 kb on + strand at 411.867 kb on - strand at 411.878 kb on - strand, within H281DRAFT_02820 at 412.100 kb on + strand, within H281DRAFT_02820 at 412.103 kb on - strand, within H281DRAFT_02820 at 412.103 kb on - strand, within H281DRAFT_02820 at 412.566 kb on + strand, within H281DRAFT_02820 at 412.642 kb on + strand, within H281DRAFT_02820 at 412.817 kb on - strand at 413.063 kb on + strand at 413.320 kb on - strand, within H281DRAFT_02821 at 413.456 kb on - strand, within H281DRAFT_02821 at 413.501 kb on + strand, within H281DRAFT_02821 at 413.502 kb on - strand, within H281DRAFT_02821 at 413.678 kb on + strand, within H281DRAFT_02821 at 413.679 kb on - strand, within H281DRAFT_02821 at 413.681 kb on - strand, within H281DRAFT_02821 at 413.814 kb on - strand, within H281DRAFT_02821 at 413.904 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM remove 411,252 + H281DRAFT_02819 0.70 -0.1 411,253 - H281DRAFT_02819 0.70 +1.7 411,378 - H281DRAFT_02819 0.78 +0.9 411,677 + -0.3 411,734 + +0.7 411,867 - -1.1 411,878 - H281DRAFT_02820 0.11 -0.6 412,100 + H281DRAFT_02820 0.30 +1.0 412,103 - H281DRAFT_02820 0.30 +0.0 412,103 - H281DRAFT_02820 0.30 -0.8 412,566 + H281DRAFT_02820 0.70 -0.0 412,642 + H281DRAFT_02820 0.76 -1.0 412,817 - -0.3 413,063 + -0.3 413,320 - H281DRAFT_02821 0.29 -0.3 413,456 - H281DRAFT_02821 0.44 -0.5 413,501 + H281DRAFT_02821 0.49 +0.3 413,502 - H281DRAFT_02821 0.49 -0.2 413,678 + H281DRAFT_02821 0.68 +0.8 413,679 - H281DRAFT_02821 0.69 -0.8 413,681 - H281DRAFT_02821 0.69 +0.8 413,814 - H281DRAFT_02821 0.83 -1.3 413,904 - +0.2
Or see this region's nucleotide sequence