Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02747

Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02746 and H281DRAFT_02747 are separated by 312 nucleotidesH281DRAFT_02747 and H281DRAFT_02748 are separated by 86 nucleotides H281DRAFT_02746: H281DRAFT_02746 - Nicotinamidase-related amidase, at 330,660 to 331,340 _02746 H281DRAFT_02747: H281DRAFT_02747 - hypothetical protein, at 331,653 to 332,063 _02747 H281DRAFT_02748: H281DRAFT_02748 - Head domain of trimeric autotransporter adhesin, at 332,150 to 336,334 _02748 Position (kb) 331 332 333Strain fitness (log2 ratio) -1 0 1at 330.868 kb on - strand, within H281DRAFT_02746at 330.935 kb on + strand, within H281DRAFT_02746at 330.936 kb on - strand, within H281DRAFT_02746at 330.936 kb on - strand, within H281DRAFT_02746at 331.134 kb on - strand, within H281DRAFT_02746at 331.505 kb on + strandat 331.837 kb on - strand, within H281DRAFT_02747at 332.030 kb on + strandat 332.076 kb on + strandat 332.084 kb on - strandat 332.427 kb on + strandat 332.570 kb on - strand, within H281DRAFT_02748at 332.956 kb on - strand, within H281DRAFT_02748

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Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM
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330,868 - H281DRAFT_02746 0.31 -0.0
330,935 + H281DRAFT_02746 0.40 -0.2
330,936 - H281DRAFT_02746 0.41 -0.7
330,936 - H281DRAFT_02746 0.41 +0.3
331,134 - H281DRAFT_02746 0.70 +0.0
331,505 + -0.4
331,837 - H281DRAFT_02747 0.45 -0.5
332,030 + -0.7
332,076 + +1.0
332,084 - +0.8
332,427 + -0.7
332,570 - H281DRAFT_02748 0.10 -0.9
332,956 - H281DRAFT_02748 0.19 -0.1

Or see this region's nucleotide sequence