Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01693 and H281DRAFT_01694 are separated by 776 nucleotides H281DRAFT_01694 and H281DRAFT_01695 are separated by 98 nucleotides H281DRAFT_01695 and H281DRAFT_01696 overlap by 4 nucleotides
H281DRAFT_01693: H281DRAFT_01693 - Threonine dehydrogenase, at 577,899 to 579,044
_01693
H281DRAFT_01694: H281DRAFT_01694 - virginiamycin B lyase, at 579,821 to 580,864
_01694
H281DRAFT_01695: H281DRAFT_01695 - hypothetical protein, at 580,963 to 581,607
_01695
H281DRAFT_01696: H281DRAFT_01696 - Predicted metal-binding membrane protein, at 581,604 to 582,395
_01696
Position (kb) 579
580
581 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 579.398 kb on + strand at 579.398 kb on + strand at 579.404 kb on + strand at 579.472 kb on - strand at 579.472 kb on - strand at 579.512 kb on + strand at 579.512 kb on + strand at 579.583 kb on + strand at 579.593 kb on - strand at 579.652 kb on + strand at 579.652 kb on + strand at 579.652 kb on + strand at 579.652 kb on + strand at 579.653 kb on - strand at 579.653 kb on - strand at 579.922 kb on - strand at 579.937 kb on - strand, within H281DRAFT_01694 at 580.029 kb on - strand, within H281DRAFT_01694 at 580.182 kb on + strand, within H281DRAFT_01694 at 580.310 kb on + strand, within H281DRAFT_01694 at 580.377 kb on - strand, within H281DRAFT_01694 at 580.410 kb on - strand, within H281DRAFT_01694 at 580.634 kb on + strand, within H281DRAFT_01694 at 580.892 kb on - strand at 580.912 kb on + strand at 580.913 kb on - strand at 580.913 kb on - strand at 580.917 kb on + strand at 581.014 kb on + strand at 581.014 kb on + strand at 581.099 kb on - strand, within H281DRAFT_01695 at 581.206 kb on - strand, within H281DRAFT_01695 at 581.206 kb on - strand, within H281DRAFT_01695 at 581.322 kb on + strand, within H281DRAFT_01695 at 581.385 kb on - strand, within H281DRAFT_01695 at 581.385 kb on - strand, within H281DRAFT_01695 at 581.420 kb on + strand, within H281DRAFT_01695 at 581.688 kb on + strand, within H281DRAFT_01696
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM remove 579,398 + -0.0 579,398 + -0.3 579,404 + -0.9 579,472 - -0.2 579,472 - +0.5 579,512 + -1.5 579,512 + -0.6 579,583 + -0.5 579,593 - +0.2 579,652 + -0.7 579,652 + -0.2 579,652 + -0.2 579,652 + +0.9 579,653 - +0.4 579,653 - -0.4 579,922 - +0.2 579,937 - H281DRAFT_01694 0.11 +0.0 580,029 - H281DRAFT_01694 0.20 -0.3 580,182 + H281DRAFT_01694 0.35 +0.3 580,310 + H281DRAFT_01694 0.47 +0.8 580,377 - H281DRAFT_01694 0.53 +0.1 580,410 - H281DRAFT_01694 0.56 +0.7 580,634 + H281DRAFT_01694 0.78 +1.2 580,892 - +0.7 580,912 + +0.0 580,913 - +0.2 580,913 - -3.4 580,917 + -0.1 581,014 + -0.6 581,014 + +0.4 581,099 - H281DRAFT_01695 0.21 -0.0 581,206 - H281DRAFT_01695 0.38 -0.4 581,206 - H281DRAFT_01695 0.38 +0.1 581,322 + H281DRAFT_01695 0.56 +0.4 581,385 - H281DRAFT_01695 0.65 +0.2 581,385 - H281DRAFT_01695 0.65 -0.1 581,420 + H281DRAFT_01695 0.71 +1.5 581,688 + H281DRAFT_01696 0.11 +0.2
Or see this region's nucleotide sequence