Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01618 and H281DRAFT_01619 are separated by 297 nucleotides H281DRAFT_01619 and H281DRAFT_01620 are separated by 166 nucleotides H281DRAFT_01620 and H281DRAFT_01621 are separated by 36 nucleotides
H281DRAFT_01618: H281DRAFT_01618 - Outer membrane protein (porin), at 498,992 to 500,143
_01618
H281DRAFT_01619: H281DRAFT_01619 - hypothetical protein, at 500,441 to 500,854
_01619
H281DRAFT_01620: H281DRAFT_01620 - LexA-binding, inner membrane-associated putative hydrolase, at 501,021 to 501,539
_01620
H281DRAFT_01621: H281DRAFT_01621 - transcriptional regulator, AraC family, at 501,576 to 502,424
_01621
Position (kb) 500
501 Strain fitness (log2 ratio) -2
-1
0
1 at 499.481 kb on + strand, within H281DRAFT_01618 at 499.481 kb on + strand, within H281DRAFT_01618 at 499.508 kb on + strand, within H281DRAFT_01618 at 499.509 kb on - strand, within H281DRAFT_01618 at 499.571 kb on + strand, within H281DRAFT_01618 at 499.571 kb on + strand, within H281DRAFT_01618 at 499.604 kb on + strand, within H281DRAFT_01618 at 499.605 kb on - strand, within H281DRAFT_01618 at 499.700 kb on + strand, within H281DRAFT_01618 at 499.701 kb on - strand, within H281DRAFT_01618 at 499.701 kb on - strand, within H281DRAFT_01618 at 499.701 kb on - strand at 499.701 kb on - strand, within H281DRAFT_01618 at 499.718 kb on + strand, within H281DRAFT_01618 at 499.718 kb on + strand, within H281DRAFT_01618 at 499.759 kb on + strand, within H281DRAFT_01618 at 499.759 kb on + strand, within H281DRAFT_01618 at 499.844 kb on + strand, within H281DRAFT_01618 at 499.844 kb on + strand, within H281DRAFT_01618 at 499.845 kb on - strand, within H281DRAFT_01618 at 499.899 kb on - strand, within H281DRAFT_01618 at 499.957 kb on + strand, within H281DRAFT_01618 at 499.957 kb on + strand, within H281DRAFT_01618 at 499.958 kb on - strand, within H281DRAFT_01618 at 499.980 kb on - strand, within H281DRAFT_01618 at 500.022 kb on - strand, within H281DRAFT_01618 at 500.022 kb on - strand, within H281DRAFT_01618 at 500.141 kb on + strand at 500.173 kb on + strand at 500.251 kb on + strand at 500.606 kb on + strand, within H281DRAFT_01619 at 500.606 kb on + strand, within H281DRAFT_01619 at 500.607 kb on - strand, within H281DRAFT_01619 at 500.607 kb on - strand, within H281DRAFT_01619 at 500.634 kb on - strand, within H281DRAFT_01619 at 500.732 kb on + strand, within H281DRAFT_01619 at 500.901 kb on - strand at 501.121 kb on - strand, within H281DRAFT_01620 at 501.121 kb on - strand, within H281DRAFT_01620 at 501.303 kb on + strand, within H281DRAFT_01620 at 501.304 kb on - strand, within H281DRAFT_01620 at 501.511 kb on + strand at 501.512 kb on - strand at 501.552 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM remove 499,481 + H281DRAFT_01618 0.42 -0.3 499,481 + H281DRAFT_01618 0.42 +0.1 499,508 + H281DRAFT_01618 0.45 -2.5 499,509 - H281DRAFT_01618 0.45 -0.9 499,571 + H281DRAFT_01618 0.50 +0.6 499,571 + H281DRAFT_01618 0.50 -2.3 499,604 + H281DRAFT_01618 0.53 +0.2 499,605 - H281DRAFT_01618 0.53 +0.7 499,700 + H281DRAFT_01618 0.61 +0.3 499,701 - H281DRAFT_01618 0.62 +0.2 499,701 - H281DRAFT_01618 0.62 -0.9 499,701 - +0.8 499,701 - H281DRAFT_01618 0.62 -0.5 499,718 + H281DRAFT_01618 0.63 -0.6 499,718 + H281DRAFT_01618 0.63 +0.3 499,759 + H281DRAFT_01618 0.67 +0.4 499,759 + H281DRAFT_01618 0.67 +0.5 499,844 + H281DRAFT_01618 0.74 -0.9 499,844 + H281DRAFT_01618 0.74 -1.4 499,845 - H281DRAFT_01618 0.74 -0.0 499,899 - H281DRAFT_01618 0.79 +0.8 499,957 + H281DRAFT_01618 0.84 -1.0 499,957 + H281DRAFT_01618 0.84 -1.4 499,958 - H281DRAFT_01618 0.84 -0.4 499,980 - H281DRAFT_01618 0.86 +1.1 500,022 - H281DRAFT_01618 0.89 +0.1 500,022 - H281DRAFT_01618 0.89 -0.8 500,141 + +0.8 500,173 + -0.2 500,251 + +0.1 500,606 + H281DRAFT_01619 0.40 -1.0 500,606 + H281DRAFT_01619 0.40 +1.3 500,607 - H281DRAFT_01619 0.40 -0.1 500,607 - H281DRAFT_01619 0.40 +0.4 500,634 - H281DRAFT_01619 0.47 -0.3 500,732 + H281DRAFT_01619 0.70 -0.3 500,901 - -0.3 501,121 - H281DRAFT_01620 0.19 +0.1 501,121 - H281DRAFT_01620 0.19 +0.1 501,303 + H281DRAFT_01620 0.54 +0.4 501,304 - H281DRAFT_01620 0.55 -0.4 501,511 + +1.4 501,512 - -1.5 501,552 + -1.6
Or see this region's nucleotide sequence