Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01268 and H281DRAFT_01269 are separated by 104 nucleotides H281DRAFT_01269 and H281DRAFT_01270 are separated by 157 nucleotides H281DRAFT_01270 and H281DRAFT_01271 are separated by 62 nucleotides
H281DRAFT_01268: H281DRAFT_01268 - RNA polymerase sigma-70 factor, ECF subfamily, at 101,890 to 102,771
_01268
H281DRAFT_01269: H281DRAFT_01269 - DNA-binding transcriptional regulator, LysR family, at 102,876 to 103,886
_01269
H281DRAFT_01270: H281DRAFT_01270 - Uncharacterized conserved protein YbjT, contains NAD(P)-binding and DUF2867 domains, at 104,044 to 104,799
_01270
H281DRAFT_01271: H281DRAFT_01271 - diguanylate cyclase (GGDEF) domain-containing protein, at 104,862 to 106,040
_01271
Position (kb) 102
103
104 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 102.118 kb on + strand, within H281DRAFT_01268 at 102.121 kb on - strand, within H281DRAFT_01268 at 102.550 kb on - strand, within H281DRAFT_01268 at 102.603 kb on + strand, within H281DRAFT_01268 at 102.603 kb on + strand, within H281DRAFT_01268 at 102.838 kb on + strand at 102.839 kb on - strand at 102.855 kb on - strand at 102.948 kb on + strand at 102.948 kb on + strand at 102.948 kb on + strand at 102.949 kb on - strand at 103.723 kb on - strand, within H281DRAFT_01269 at 103.746 kb on + strand, within H281DRAFT_01269 at 103.746 kb on + strand, within H281DRAFT_01269 at 103.746 kb on + strand, within H281DRAFT_01269 at 103.747 kb on - strand, within H281DRAFT_01269 at 103.804 kb on - strand at 104.416 kb on + strand, within H281DRAFT_01270 at 104.416 kb on + strand, within H281DRAFT_01270 at 104.417 kb on - strand, within H281DRAFT_01270 at 104.639 kb on - strand, within H281DRAFT_01270 at 104.867 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM remove 102,118 + H281DRAFT_01268 0.26 +0.2 102,121 - H281DRAFT_01268 0.26 +0.9 102,550 - H281DRAFT_01268 0.75 -2.2 102,603 + H281DRAFT_01268 0.81 +0.4 102,603 + H281DRAFT_01268 0.81 -1.2 102,838 + +0.3 102,839 - -1.2 102,855 - +0.7 102,948 + +0.4 102,948 + +3.3 102,948 + +0.3 102,949 - -0.3 103,723 - H281DRAFT_01269 0.84 -0.1 103,746 + H281DRAFT_01269 0.86 -0.8 103,746 + H281DRAFT_01269 0.86 +0.1 103,746 + H281DRAFT_01269 0.86 +1.0 103,747 - H281DRAFT_01269 0.86 -0.4 103,804 - -0.2 104,416 + H281DRAFT_01270 0.49 -0.1 104,416 + H281DRAFT_01270 0.49 +2.3 104,417 - H281DRAFT_01270 0.49 -0.1 104,639 - H281DRAFT_01270 0.79 -0.2 104,867 + +1.0
Or see this region's nucleotide sequence