Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01199

Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01198 and H281DRAFT_01199 are separated by 37 nucleotidesH281DRAFT_01199 and H281DRAFT_01200 overlap by 4 nucleotidesH281DRAFT_01200 and H281DRAFT_01201 overlap by 4 nucleotides H281DRAFT_01198: H281DRAFT_01198 - Predicted arabinose efflux permease, MFS family, at 35,299 to 36,561 _01198 H281DRAFT_01199: H281DRAFT_01199 - Enoyl-CoA hydratase/carnithine racemase, at 36,599 to 37,759 _01199 H281DRAFT_01200: H281DRAFT_01200 - short chain enoyl-CoA hydratase (EC 4.2.1.17), at 37,756 to 38,592 _01200 H281DRAFT_01201: H281DRAFT_01201 - 3-hydroxyisobutyrate dehydrogenase, at 38,589 to 39,518 _01201 Position (kb) 36 37 38Strain fitness (log2 ratio) -1 0 1at 35.907 kb on - strand, within H281DRAFT_01198at 35.946 kb on + strand, within H281DRAFT_01198at 35.947 kb on - strand, within H281DRAFT_01198at 35.988 kb on + strand, within H281DRAFT_01198at 36.062 kb on + strand, within H281DRAFT_01198at 36.064 kb on + strand, within H281DRAFT_01198at 36.064 kb on + strand, within H281DRAFT_01198at 36.064 kb on + strand, within H281DRAFT_01198at 36.064 kb on + strand, within H281DRAFT_01198at 36.064 kb on + strand, within H281DRAFT_01198at 36.064 kb on + strand, within H281DRAFT_01198at 36.064 kb on + strand, within H281DRAFT_01198at 36.065 kb on - strand, within H281DRAFT_01198at 36.065 kb on - strand, within H281DRAFT_01198at 36.065 kb on - strand, within H281DRAFT_01198at 36.214 kb on + strand, within H281DRAFT_01198at 36.214 kb on + strand, within H281DRAFT_01198at 36.215 kb on - strand, within H281DRAFT_01198at 36.215 kb on - strand, within H281DRAFT_01198at 36.215 kb on - strand, within H281DRAFT_01198at 36.215 kb on - strand, within H281DRAFT_01198at 36.388 kb on - strand, within H281DRAFT_01198at 36.388 kb on - strand, within H281DRAFT_01198at 36.842 kb on + strand, within H281DRAFT_01199at 36.843 kb on - strand, within H281DRAFT_01199at 36.865 kb on - strand, within H281DRAFT_01199at 36.865 kb on - strand, within H281DRAFT_01199at 36.865 kb on - strand, within H281DRAFT_01199at 36.900 kb on + strandat 36.901 kb on - strand, within H281DRAFT_01199at 37.224 kb on + strand, within H281DRAFT_01199at 37.224 kb on + strand, within H281DRAFT_01199at 38.447 kb on - strand, within H281DRAFT_01200at 38.576 kb on + strandat 38.648 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM
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35,907 - H281DRAFT_01198 0.48 +0.0
35,946 + H281DRAFT_01198 0.51 -0.0
35,947 - H281DRAFT_01198 0.51 -0.3
35,988 + H281DRAFT_01198 0.55 +0.3
36,062 + H281DRAFT_01198 0.60 +1.3
36,064 + H281DRAFT_01198 0.61 +0.2
36,064 + H281DRAFT_01198 0.61 +0.1
36,064 + H281DRAFT_01198 0.61 +0.6
36,064 + H281DRAFT_01198 0.61 -0.7
36,064 + H281DRAFT_01198 0.61 -0.1
36,064 + H281DRAFT_01198 0.61 -0.0
36,064 + H281DRAFT_01198 0.61 +0.2
36,065 - H281DRAFT_01198 0.61 -0.1
36,065 - H281DRAFT_01198 0.61 -0.9
36,065 - H281DRAFT_01198 0.61 -0.7
36,214 + H281DRAFT_01198 0.72 -0.4
36,214 + H281DRAFT_01198 0.72 -0.2
36,215 - H281DRAFT_01198 0.73 -0.8
36,215 - H281DRAFT_01198 0.73 -1.7
36,215 - H281DRAFT_01198 0.73 +0.7
36,215 - H281DRAFT_01198 0.73 -0.9
36,388 - H281DRAFT_01198 0.86 +1.2
36,388 - H281DRAFT_01198 0.86 -0.5
36,842 + H281DRAFT_01199 0.21 +0.3
36,843 - H281DRAFT_01199 0.21 +1.0
36,865 - H281DRAFT_01199 0.23 +0.5
36,865 - H281DRAFT_01199 0.23 +0.5
36,865 - H281DRAFT_01199 0.23 -0.8
36,900 + -0.3
36,901 - H281DRAFT_01199 0.26 +0.1
37,224 + H281DRAFT_01199 0.54 +0.4
37,224 + H281DRAFT_01199 0.54 +1.4
38,447 - H281DRAFT_01200 0.83 +0.0
38,576 + -0.5
38,648 - +0.3

Or see this region's nucleotide sequence