Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01154

Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_01152 and H281DRAFT_01153 are separated by 227 nucleotidesH281DRAFT_01153 and H281DRAFT_01154 are separated by 111 nucleotidesH281DRAFT_01154 and H281DRAFT_01155 are separated by 325 nucleotides H281DRAFT_01152: H281DRAFT_01152 - hopanoid biosynthesis associated radical SAM protein HpnJ, at 1,301,631 to 1,303,052 _01152 H281DRAFT_01153: H281DRAFT_01153 - hypothetical protein, at 1,303,280 to 1,303,660 _01153 H281DRAFT_01154: H281DRAFT_01154 - cold-shock DNA-binding protein family, at 1,303,772 to 1,303,975 _01154 H281DRAFT_01155: H281DRAFT_01155 - 2,5-dioxopentanoate dehydrogenase (NAD+), at 1,304,301 to 1,305,746 _01155 Position (kb) 1303 1304Strain fitness (log2 ratio) -1 0 1at 1302.956 kb on - strandat 1303.021 kb on + strandat 1303.412 kb on - strand, within H281DRAFT_01153at 1303.609 kb on - strand, within H281DRAFT_01153at 1304.202 kb on + strandat 1304.203 kb on - strandat 1304.288 kb on + strandat 1304.318 kb on + strandat 1304.318 kb on + strandat 1304.526 kb on - strand, within H281DRAFT_01155

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM
remove
1,302,956 - -0.0
1,303,021 + +0.6
1,303,412 - H281DRAFT_01153 0.35 +0.5
1,303,609 - H281DRAFT_01153 0.86 +0.0
1,304,202 + +0.3
1,304,203 - -0.5
1,304,288 + +0.1
1,304,318 + +0.3
1,304,318 + +0.5
1,304,526 - H281DRAFT_01155 0.16 -0.4

Or see this region's nucleotide sequence