Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01116

Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01115 and H281DRAFT_01116 are separated by 34 nucleotidesH281DRAFT_01116 and H281DRAFT_01117 are separated by 138 nucleotides H281DRAFT_01115: H281DRAFT_01115 - deoxynucleoside transporter, permease component 1 (from data), at 1,255,124 to 1,256,197 _01115 H281DRAFT_01116: H281DRAFT_01116 - deoxyribose kinase (EC 2.7.1.15) (from data), at 1,256,232 to 1,257,194 _01116 H281DRAFT_01117: H281DRAFT_01117 - acetaldehyde dehydrogenase (EC 1.2.1.3) (from data), at 1,257,333 to 1,259,720 _01117 Position (kb) 1256 1257 1258Strain fitness (log2 ratio) -1 0 1 2at 1255.358 kb on - strand, within H281DRAFT_01115at 1255.762 kb on + strand, within H281DRAFT_01115at 1255.888 kb on - strand, within H281DRAFT_01115at 1256.268 kb on + strandat 1256.329 kb on - strand, within H281DRAFT_01116at 1257.146 kb on - strandat 1257.273 kb on + strandat 1257.344 kb on - strandat 1257.622 kb on + strand, within H281DRAFT_01117at 1257.623 kb on - strand, within H281DRAFT_01117at 1257.965 kb on - strand, within H281DRAFT_01117

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Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM
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1,255,358 - H281DRAFT_01115 0.22 -0.1
1,255,762 + H281DRAFT_01115 0.59 -1.1
1,255,888 - H281DRAFT_01115 0.71 -0.3
1,256,268 + -0.8
1,256,329 - H281DRAFT_01116 0.10 +0.5
1,257,146 - -0.3
1,257,273 + +0.3
1,257,344 - -0.3
1,257,622 + H281DRAFT_01117 0.12 +2.7
1,257,623 - H281DRAFT_01117 0.12 -0.1
1,257,965 - H281DRAFT_01117 0.26 -1.7

Or see this region's nucleotide sequence