Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00756

Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00755 and H281DRAFT_00756 are separated by 140 nucleotidesH281DRAFT_00756 and H281DRAFT_00757 are separated by 35 nucleotidesH281DRAFT_00757 and H281DRAFT_00758 are separated by 403 nucleotides H281DRAFT_00755: H281DRAFT_00755 - transcriptional regulator, TetR family, at 847,171 to 848,166 _00755 H281DRAFT_00756: H281DRAFT_00756 - Enoyl-CoA hydratase/carnithine racemase, at 848,307 to 849,437 _00756 H281DRAFT_00757: H281DRAFT_00757 - hypothetical protein, at 849,473 to 849,898 _00757 H281DRAFT_00758: H281DRAFT_00758 - alkanesulfonate monooxygenase, at 850,302 to 851,462 _00758 Position (kb) 848 849 850Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 847.320 kb on + strand, within H281DRAFT_00755at 847.320 kb on + strand, within H281DRAFT_00755at 847.400 kb on - strand, within H281DRAFT_00755at 847.453 kb on + strand, within H281DRAFT_00755at 847.534 kb on + strand, within H281DRAFT_00755at 847.534 kb on + strand, within H281DRAFT_00755at 847.534 kb on + strand, within H281DRAFT_00755at 847.535 kb on - strand, within H281DRAFT_00755at 847.568 kb on - strand, within H281DRAFT_00755at 847.597 kb on + strand, within H281DRAFT_00755at 847.598 kb on - strand, within H281DRAFT_00755at 848.183 kb on + strandat 848.334 kb on - strandat 848.353 kb on - strandat 848.357 kb on - strandat 848.542 kb on - strand, within H281DRAFT_00756at 848.542 kb on - strand, within H281DRAFT_00756at 848.637 kb on + strand, within H281DRAFT_00756at 848.637 kb on + strand, within H281DRAFT_00756at 848.637 kb on + strand, within H281DRAFT_00756at 848.638 kb on - strand, within H281DRAFT_00756at 848.787 kb on - strand, within H281DRAFT_00756at 848.787 kb on - strand, within H281DRAFT_00756at 848.892 kb on + strand, within H281DRAFT_00756at 848.892 kb on + strand, within H281DRAFT_00756at 848.893 kb on - strand, within H281DRAFT_00756at 848.893 kb on - strand, within H281DRAFT_00756at 848.893 kb on - strand, within H281DRAFT_00756at 848.998 kb on - strand, within H281DRAFT_00756at 849.155 kb on - strand, within H281DRAFT_00756at 849.309 kb on - strand, within H281DRAFT_00756at 849.713 kb on + strandat 849.770 kb on + strand, within H281DRAFT_00757at 849.969 kb on + strandat 849.969 kb on + strandat 850.024 kb on + strandat 850.025 kb on - strandat 850.113 kb on + strandat 850.114 kb on - strandat 850.114 kb on - strandat 850.206 kb on + strandat 850.207 kb on - strandat 850.207 kb on - strandat 850.386 kb on + strandat 850.425 kb on + strand, within H281DRAFT_00758

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Per-strain Table

Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM
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847,320 + H281DRAFT_00755 0.15 +0.3
847,320 + H281DRAFT_00755 0.15 +0.0
847,400 - H281DRAFT_00755 0.23 -1.2
847,453 + H281DRAFT_00755 0.28 +1.0
847,534 + H281DRAFT_00755 0.36 -0.6
847,534 + H281DRAFT_00755 0.36 +1.0
847,534 + H281DRAFT_00755 0.36 -1.9
847,535 - H281DRAFT_00755 0.37 -1.4
847,568 - H281DRAFT_00755 0.40 +2.0
847,597 + H281DRAFT_00755 0.43 +0.1
847,598 - H281DRAFT_00755 0.43 +0.4
848,183 + +0.4
848,334 - +1.1
848,353 - +0.0
848,357 - +3.3
848,542 - H281DRAFT_00756 0.21 +0.4
848,542 - H281DRAFT_00756 0.21 -1.7
848,637 + H281DRAFT_00756 0.29 +0.4
848,637 + H281DRAFT_00756 0.29 +1.1
848,637 + H281DRAFT_00756 0.29 +0.9
848,638 - H281DRAFT_00756 0.29 -0.5
848,787 - H281DRAFT_00756 0.42 +0.5
848,787 - H281DRAFT_00756 0.42 -1.3
848,892 + H281DRAFT_00756 0.52 -0.1
848,892 + H281DRAFT_00756 0.52 -0.1
848,893 - H281DRAFT_00756 0.52 +0.4
848,893 - H281DRAFT_00756 0.52 +0.1
848,893 - H281DRAFT_00756 0.52 +1.2
848,998 - H281DRAFT_00756 0.61 -0.1
849,155 - H281DRAFT_00756 0.75 -0.8
849,309 - H281DRAFT_00756 0.89 +0.6
849,713 + +1.5
849,770 + H281DRAFT_00757 0.70 -1.7
849,969 + +0.4
849,969 + -0.4
850,024 + -0.6
850,025 - -0.1
850,113 + -3.2
850,114 - +0.1
850,114 - -1.1
850,206 + +0.0
850,207 - +0.5
850,207 - +1.0
850,386 + -0.6
850,425 + H281DRAFT_00758 0.11 -0.4

Or see this region's nucleotide sequence