Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00574 and H281DRAFT_00575 are separated by 140 nucleotides H281DRAFT_00575 and H281DRAFT_00576 are separated by 147 nucleotides
H281DRAFT_00574: H281DRAFT_00574 - transcriptional regulator, AraC family, at 639,989 to 640,900
_00574
H281DRAFT_00575: H281DRAFT_00575 - Uncharacterized conserved protein YtfP, gamma-glutamylcyclotransferase (GGCT)/AIG2-like family, at 641,041 to 641,442
_00575
H281DRAFT_00576: H281DRAFT_00576 - malate synthase, at 641,590 to 643,191
_00576
Position (kb) 641
642 Strain fitness (log2 ratio) -1
0
1
2 at 640.043 kb on + strand at 640.044 kb on - strand at 640.325 kb on + strand, within H281DRAFT_00574 at 640.388 kb on + strand, within H281DRAFT_00574 at 640.452 kb on - strand, within H281DRAFT_00574 at 640.460 kb on + strand, within H281DRAFT_00574 at 640.460 kb on + strand, within H281DRAFT_00574 at 640.602 kb on + strand, within H281DRAFT_00574 at 640.603 kb on - strand, within H281DRAFT_00574 at 640.603 kb on - strand, within H281DRAFT_00574 at 640.737 kb on + strand, within H281DRAFT_00574 at 640.737 kb on + strand, within H281DRAFT_00574 at 640.737 kb on + strand, within H281DRAFT_00574 at 640.737 kb on + strand, within H281DRAFT_00574 at 640.738 kb on - strand, within H281DRAFT_00574 at 640.738 kb on - strand, within H281DRAFT_00574 at 640.763 kb on - strand, within H281DRAFT_00574 at 640.763 kb on - strand, within H281DRAFT_00574 at 640.763 kb on - strand, within H281DRAFT_00574 at 640.763 kb on - strand, within H281DRAFT_00574 at 640.968 kb on + strand at 640.968 kb on + strand at 640.968 kb on + strand at 640.969 kb on - strand at 640.996 kb on + strand at 640.997 kb on - strand at 640.997 kb on - strand at 641.019 kb on + strand at 641.057 kb on + strand at 641.057 kb on + strand at 641.057 kb on + strand at 641.057 kb on + strand at 641.058 kb on - strand at 641.058 kb on - strand at 641.058 kb on - strand at 641.060 kb on - strand at 641.234 kb on - strand, within H281DRAFT_00575 at 641.284 kb on + strand, within H281DRAFT_00575 at 641.462 kb on + strand at 641.462 kb on + strand at 641.462 kb on + strand at 641.567 kb on + strand at 641.567 kb on + strand at 641.567 kb on + strand at 641.567 kb on + strand at 641.604 kb on - strand at 641.678 kb on + strand at 641.679 kb on - strand at 641.689 kb on - strand at 641.809 kb on + strand, within H281DRAFT_00576 at 641.901 kb on - strand, within H281DRAFT_00576 at 642.254 kb on + strand, within H281DRAFT_00576 at 642.351 kb on - strand, within H281DRAFT_00576 at 642.351 kb on - strand, within H281DRAFT_00576 at 642.382 kb on - strand, within H281DRAFT_00576 at 642.382 kb on - strand, within H281DRAFT_00576 at 642.382 kb on - strand, within H281DRAFT_00576 at 642.382 kb on - strand, within H281DRAFT_00576 at 642.398 kb on + strand, within H281DRAFT_00576
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM remove 640,043 + -0.8 640,044 - +1.8 640,325 + H281DRAFT_00574 0.37 +0.5 640,388 + H281DRAFT_00574 0.44 -0.3 640,452 - H281DRAFT_00574 0.51 +1.1 640,460 + H281DRAFT_00574 0.52 +0.9 640,460 + H281DRAFT_00574 0.52 -0.3 640,602 + H281DRAFT_00574 0.67 +1.4 640,603 - H281DRAFT_00574 0.67 -0.5 640,603 - H281DRAFT_00574 0.67 -0.1 640,737 + H281DRAFT_00574 0.82 +2.1 640,737 + H281DRAFT_00574 0.82 +1.0 640,737 + H281DRAFT_00574 0.82 +2.3 640,737 + H281DRAFT_00574 0.82 +0.4 640,738 - H281DRAFT_00574 0.82 +0.2 640,738 - H281DRAFT_00574 0.82 +0.8 640,763 - H281DRAFT_00574 0.85 +0.2 640,763 - H281DRAFT_00574 0.85 -0.4 640,763 - H281DRAFT_00574 0.85 +0.0 640,763 - H281DRAFT_00574 0.85 +0.2 640,968 + +1.1 640,968 + +0.5 640,968 + +0.6 640,969 - +0.5 640,996 + +0.7 640,997 - -0.3 640,997 - +0.2 641,019 + -1.3 641,057 + -0.4 641,057 + -0.1 641,057 + -0.8 641,057 + +0.5 641,058 - -0.1 641,058 - +1.5 641,058 - +0.5 641,060 - -0.2 641,234 - H281DRAFT_00575 0.48 -0.7 641,284 + H281DRAFT_00575 0.60 -0.6 641,462 + -1.5 641,462 + -0.4 641,462 + +0.0 641,567 + +0.3 641,567 + -1.7 641,567 + +0.5 641,567 + +1.1 641,604 - -0.7 641,678 + +0.5 641,679 - -0.7 641,689 - +0.1 641,809 + H281DRAFT_00576 0.14 +0.4 641,901 - H281DRAFT_00576 0.19 -0.2 642,254 + H281DRAFT_00576 0.41 +0.2 642,351 - H281DRAFT_00576 0.48 +0.2 642,351 - H281DRAFT_00576 0.48 +1.5 642,382 - H281DRAFT_00576 0.49 +1.9 642,382 - H281DRAFT_00576 0.49 +0.2 642,382 - H281DRAFT_00576 0.49 +0.5 642,382 - H281DRAFT_00576 0.49 -0.1 642,398 + H281DRAFT_00576 0.50 -0.2
Or see this region's nucleotide sequence