Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00286 and H281DRAFT_00287 are separated by 293 nucleotides H281DRAFT_00287 and H281DRAFT_00288 are separated by 40 nucleotides
H281DRAFT_00286: H281DRAFT_00286 - transaldolase, at 306,650 to 307,603
_00286
H281DRAFT_00287: H281DRAFT_00287 - benzoate membrane transport protein, at 307,897 to 309,117
_00287
H281DRAFT_00288: H281DRAFT_00288 - hypothetical protein, at 309,158 to 310,333
_00288
Position (kb) 307
308
309
310 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 307.065 kb on + strand, within H281DRAFT_00286 at 307.075 kb on - strand, within H281DRAFT_00286 at 307.266 kb on + strand, within H281DRAFT_00286 at 307.267 kb on - strand, within H281DRAFT_00286 at 307.572 kb on + strand at 307.572 kb on + strand at 307.573 kb on - strand at 307.603 kb on + strand at 307.603 kb on + strand at 307.741 kb on + strand at 307.741 kb on + strand at 307.765 kb on + strand at 307.765 kb on + strand at 307.837 kb on + strand at 307.837 kb on + strand at 307.837 kb on + strand at 307.838 kb on - strand at 307.838 kb on - strand at 307.894 kb on + strand at 307.895 kb on - strand at 307.895 kb on - strand at 308.198 kb on + strand, within H281DRAFT_00287 at 308.344 kb on - strand, within H281DRAFT_00287 at 308.344 kb on - strand, within H281DRAFT_00287 at 308.346 kb on - strand, within H281DRAFT_00287 at 308.346 kb on - strand, within H281DRAFT_00287 at 308.588 kb on + strand, within H281DRAFT_00287 at 308.588 kb on + strand, within H281DRAFT_00287 at 308.589 kb on - strand, within H281DRAFT_00287 at 309.210 kb on + strand at 309.297 kb on + strand, within H281DRAFT_00288 at 309.297 kb on + strand, within H281DRAFT_00288 at 309.297 kb on + strand, within H281DRAFT_00288 at 309.358 kb on - strand, within H281DRAFT_00288 at 309.513 kb on + strand, within H281DRAFT_00288 at 309.531 kb on + strand, within H281DRAFT_00288 at 309.535 kb on - strand, within H281DRAFT_00288 at 309.903 kb on + strand, within H281DRAFT_00288 at 309.904 kb on - strand, within H281DRAFT_00288
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM remove 307,065 + H281DRAFT_00286 0.44 -3.2 307,075 - H281DRAFT_00286 0.45 -4.2 307,266 + H281DRAFT_00286 0.65 -2.1 307,267 - H281DRAFT_00286 0.65 -3.9 307,572 + -2.8 307,572 + -2.3 307,573 - -1.3 307,603 + +0.7 307,603 + -3.8 307,741 + +0.5 307,741 + +0.1 307,765 + +0.7 307,765 + +0.4 307,837 + +0.8 307,837 + +0.1 307,837 + +0.1 307,838 - +0.8 307,838 - +3.5 307,894 + +0.8 307,895 - -1.2 307,895 - +0.7 308,198 + H281DRAFT_00287 0.25 -0.4 308,344 - H281DRAFT_00287 0.37 +1.8 308,344 - H281DRAFT_00287 0.37 +0.0 308,346 - H281DRAFT_00287 0.37 +0.2 308,346 - H281DRAFT_00287 0.37 +0.2 308,588 + H281DRAFT_00287 0.57 +0.7 308,588 + H281DRAFT_00287 0.57 -0.2 308,589 - H281DRAFT_00287 0.57 +2.7 309,210 + -0.0 309,297 + H281DRAFT_00288 0.12 -1.2 309,297 + H281DRAFT_00288 0.12 -0.4 309,297 + H281DRAFT_00288 0.12 -0.5 309,358 - H281DRAFT_00288 0.17 +2.2 309,513 + H281DRAFT_00288 0.30 +2.0 309,531 + H281DRAFT_00288 0.32 +0.2 309,535 - H281DRAFT_00288 0.32 +0.1 309,903 + H281DRAFT_00288 0.63 -0.5 309,904 - H281DRAFT_00288 0.63 -0.4
Or see this region's nucleotide sequence