Strain Fitness in Caulobacter crescentus NA1000 around CCNA_01939

Experiment: PYE with Aluminum chloride 1.25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_01937 and CCNA_01938 overlap by 4 nucleotidesCCNA_01938 and CCNA_01939 overlap by 8 nucleotidesCCNA_01939 and CCNA_01940 overlap by 4 nucleotides CCNA_01937: CCNA_01937 - FeS assembly protein SufD, at 2,080,163 to 2,081,191 _01937 CCNA_01938: CCNA_01938 - ATP-dependent transporter SufC, at 2,081,188 to 2,081,937 _01938 CCNA_01939: CCNA_01939 - ADP-ribosylglycohydrolase, at 2,081,930 to 2,082,319 _01939 CCNA_01940: CCNA_01940 - ABC transporter-associated protein SufB, at 2,082,316 to 2,083,785 _01940 Position (kb) 2081 2082 2083Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2081.099 kb on - strandat 2081.174 kb on - strandat 2081.974 kb on - strand, within CCNA_01939at 2082.010 kb on - strand, within CCNA_01939at 2082.045 kb on + strand, within CCNA_01939at 2082.045 kb on + strand, within CCNA_01939at 2082.053 kb on - strand, within CCNA_01939at 2082.087 kb on - strand, within CCNA_01939at 2082.191 kb on + strand, within CCNA_01939at 2082.216 kb on - strand, within CCNA_01939at 2082.257 kb on - strand, within CCNA_01939at 2082.288 kb on - strandat 2082.302 kb on - strandat 2082.302 kb on - strandat 2082.304 kb on + strandat 2082.304 kb on + strandat 2082.306 kb on - strandat 2082.312 kb on - strandat 2082.312 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Aluminum chloride 1.25 mM
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2,081,099 - +0.7
2,081,174 - +1.8
2,081,974 - CCNA_01939 0.11 +1.6
2,082,010 - CCNA_01939 0.21 +2.9
2,082,045 + CCNA_01939 0.29 -0.1
2,082,045 + CCNA_01939 0.29 -2.0
2,082,053 - CCNA_01939 0.32 +1.0
2,082,087 - CCNA_01939 0.40 +1.1
2,082,191 + CCNA_01939 0.67 -1.2
2,082,216 - CCNA_01939 0.73 +1.7
2,082,257 - CCNA_01939 0.84 +2.1
2,082,288 - +0.9
2,082,302 - +1.4
2,082,302 - +1.3
2,082,304 + +0.4
2,082,304 + +0.3
2,082,306 - +1.7
2,082,312 - +1.8
2,082,312 - +1.3

Or see this region's nucleotide sequence