Experiment: PYE with Aluminum chloride 1.25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00683 and CCNA_00684 are separated by 12 nucleotides CCNA_00684 and CCNA_00685 overlap by 4 nucleotides CCNA_00685 and CCNA_00686 are separated by 171 nucleotides
CCNA_00683: CCNA_00683 - Deoxyribodipyrimidine photo-lyase-related protein, at 738,931 to 740,460
_00683
CCNA_00684: CCNA_00684 - anti-sigma factor, ChrR-family, at 740,473 to 741,111
_00684
CCNA_00685: CCNA_00685 - RNA polymerase sigma factor, at 741,108 to 741,725
_00685
CCNA_00686: CCNA_00686 - peptidase family S41 protein, at 741,897 to 743,330
_00686
Position (kb) 741
742 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 740.111 kb on + strand, within CCNA_00683 at 740.114 kb on - strand, within CCNA_00683 at 740.114 kb on - strand, within CCNA_00683 at 740.119 kb on - strand, within CCNA_00683 at 740.119 kb on - strand, within CCNA_00683 at 740.125 kb on + strand, within CCNA_00683 at 740.125 kb on + strand, within CCNA_00683 at 740.126 kb on - strand, within CCNA_00683 at 740.157 kb on + strand, within CCNA_00683 at 740.228 kb on + strand, within CCNA_00683 at 740.248 kb on - strand, within CCNA_00683 at 740.248 kb on - strand, within CCNA_00683 at 740.253 kb on + strand, within CCNA_00683 at 740.253 kb on + strand, within CCNA_00683 at 740.253 kb on + strand, within CCNA_00683 at 740.261 kb on - strand, within CCNA_00683 at 740.308 kb on - strand at 740.308 kb on - strand at 740.339 kb on - strand at 740.345 kb on + strand at 740.356 kb on + strand at 740.364 kb on - strand at 740.364 kb on - strand at 740.373 kb on + strand at 740.393 kb on + strand at 740.406 kb on - strand at 740.424 kb on - strand at 740.436 kb on + strand at 740.444 kb on - strand at 740.444 kb on - strand at 740.448 kb on + strand at 740.458 kb on - strand at 740.468 kb on - strand at 740.471 kb on + strand at 740.471 kb on + strand at 740.471 kb on + strand at 740.471 kb on + strand at 740.479 kb on - strand at 740.479 kb on - strand at 740.479 kb on - strand at 740.479 kb on - strand at 740.479 kb on - strand at 740.527 kb on - strand at 740.541 kb on - strand, within CCNA_00684 at 740.546 kb on - strand, within CCNA_00684 at 741.113 kb on - strand at 741.113 kb on - strand at 741.126 kb on - strand at 741.127 kb on - strand at 741.134 kb on + strand at 741.142 kb on - strand at 741.142 kb on - strand at 741.142 kb on - strand at 741.142 kb on - strand at 741.192 kb on + strand, within CCNA_00685 at 741.233 kb on - strand, within CCNA_00685 at 741.245 kb on - strand, within CCNA_00685 at 741.256 kb on + strand, within CCNA_00685 at 741.256 kb on + strand, within CCNA_00685 at 741.256 kb on + strand, within CCNA_00685 at 741.256 kb on + strand, within CCNA_00685 at 741.271 kb on + strand, within CCNA_00685 at 741.274 kb on - strand, within CCNA_00685 at 741.286 kb on - strand, within CCNA_00685 at 741.307 kb on - strand, within CCNA_00685 at 741.345 kb on - strand, within CCNA_00685 at 741.358 kb on - strand, within CCNA_00685 at 741.370 kb on - strand, within CCNA_00685 at 741.371 kb on - strand, within CCNA_00685 at 741.376 kb on + strand, within CCNA_00685 at 741.383 kb on + strand, within CCNA_00685 at 741.399 kb on - strand, within CCNA_00685 at 741.438 kb on + strand, within CCNA_00685 at 741.438 kb on + strand, within CCNA_00685 at 741.552 kb on + strand, within CCNA_00685 at 741.575 kb on + strand, within CCNA_00685 at 741.583 kb on - strand, within CCNA_00685 at 741.593 kb on + strand, within CCNA_00685 at 741.612 kb on + strand, within CCNA_00685 at 741.649 kb on + strand, within CCNA_00685 at 741.659 kb on + strand, within CCNA_00685 at 741.662 kb on - strand, within CCNA_00685 at 741.662 kb on - strand, within CCNA_00685 at 741.672 kb on - strand at 741.674 kb on - strand at 741.710 kb on - strand at 741.727 kb on + strand at 741.735 kb on - strand at 741.742 kb on - strand at 741.802 kb on - strand at 741.818 kb on + strand at 741.819 kb on + strand at 741.825 kb on + strand at 741.825 kb on + strand at 741.840 kb on - strand at 741.883 kb on + strand at 741.896 kb on - strand at 741.915 kb on - strand at 741.915 kb on - strand at 741.915 kb on - strand at 741.986 kb on + strand at 741.986 kb on + strand at 742.013 kb on + strand at 742.025 kb on + strand at 742.030 kb on + strand at 742.041 kb on + strand, within CCNA_00686 at 742.045 kb on + strand, within CCNA_00686 at 742.046 kb on + strand, within CCNA_00686 at 742.061 kb on + strand at 742.061 kb on + strand, within CCNA_00686 at 742.061 kb on + strand, within CCNA_00686 at 742.061 kb on + strand, within CCNA_00686 at 742.061 kb on + strand, within CCNA_00686 at 742.069 kb on - strand, within CCNA_00686 at 742.069 kb on - strand, within CCNA_00686 at 742.069 kb on - strand, within CCNA_00686 at 742.069 kb on - strand, within CCNA_00686 at 742.069 kb on - strand, within CCNA_00686 at 742.069 kb on - strand, within CCNA_00686 at 742.069 kb on - strand, within CCNA_00686 at 742.069 kb on - strand, within CCNA_00686 at 742.085 kb on + strand, within CCNA_00686 at 742.093 kb on - strand, within CCNA_00686 at 742.108 kb on + strand, within CCNA_00686 at 742.108 kb on + strand, within CCNA_00686 at 742.116 kb on - strand, within CCNA_00686 at 742.116 kb on - strand, within CCNA_00686 at 742.116 kb on - strand, within CCNA_00686 at 742.116 kb on - strand, within CCNA_00686 at 742.116 kb on - strand, within CCNA_00686 at 742.123 kb on + strand, within CCNA_00686 at 742.125 kb on - strand, within CCNA_00686 at 742.126 kb on - strand, within CCNA_00686 at 742.131 kb on - strand, within CCNA_00686 at 742.150 kb on - strand, within CCNA_00686 at 742.150 kb on - strand, within CCNA_00686 at 742.212 kb on + strand, within CCNA_00686 at 742.222 kb on - strand, within CCNA_00686 at 742.252 kb on + strand, within CCNA_00686 at 742.257 kb on + strand, within CCNA_00686 at 742.272 kb on - strand, within CCNA_00686 at 742.291 kb on + strand, within CCNA_00686 at 742.291 kb on + strand, within CCNA_00686 at 742.299 kb on - strand, within CCNA_00686 at 742.328 kb on + strand, within CCNA_00686 at 742.333 kb on - strand, within CCNA_00686 at 742.351 kb on + strand, within CCNA_00686 at 742.359 kb on + strand, within CCNA_00686 at 742.364 kb on + strand, within CCNA_00686 at 742.369 kb on + strand at 742.411 kb on - strand, within CCNA_00686 at 742.417 kb on + strand, within CCNA_00686 at 742.418 kb on - strand, within CCNA_00686 at 742.457 kb on + strand, within CCNA_00686 at 742.502 kb on + strand, within CCNA_00686 at 742.552 kb on + strand, within CCNA_00686 at 742.560 kb on - strand, within CCNA_00686 at 742.610 kb on + strand, within CCNA_00686 at 742.610 kb on + strand, within CCNA_00686 at 742.610 kb on + strand, within CCNA_00686 at 742.610 kb on + strand, within CCNA_00686 at 742.617 kb on + strand, within CCNA_00686 at 742.618 kb on - strand, within CCNA_00686 at 742.618 kb on - strand, within CCNA_00686 at 742.644 kb on + strand, within CCNA_00686 at 742.644 kb on + strand, within CCNA_00686 at 742.652 kb on - strand, within CCNA_00686 at 742.652 kb on - strand, within CCNA_00686 at 742.666 kb on - strand, within CCNA_00686 at 742.668 kb on - strand, within CCNA_00686 at 742.670 kb on + strand, within CCNA_00686
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Aluminum chloride 1.25 mM remove 740,111 + CCNA_00683 0.77 +0.0 740,114 - CCNA_00683 0.77 -0.9 740,114 - CCNA_00683 0.77 +0.3 740,119 - CCNA_00683 0.78 -0.8 740,119 - CCNA_00683 0.78 -0.6 740,125 + CCNA_00683 0.78 -1.5 740,125 + CCNA_00683 0.78 +0.2 740,126 - CCNA_00683 0.78 +1.3 740,157 + CCNA_00683 0.80 -1.0 740,228 + CCNA_00683 0.85 -0.3 740,248 - CCNA_00683 0.86 -0.7 740,248 - CCNA_00683 0.86 +0.1 740,253 + CCNA_00683 0.86 +0.1 740,253 + CCNA_00683 0.86 +2.3 740,253 + CCNA_00683 0.86 +0.2 740,261 - CCNA_00683 0.87 -0.2 740,308 - +1.8 740,308 - -1.9 740,339 - +0.3 740,345 + -1.5 740,356 + +0.6 740,364 - -1.0 740,364 - +0.6 740,373 + -0.3 740,393 + +1.7 740,406 - +2.7 740,424 - +0.4 740,436 + -0.8 740,444 - -0.0 740,444 - +0.2 740,448 + -0.7 740,458 - +0.4 740,468 - +1.4 740,471 + -1.2 740,471 + -1.3 740,471 + +0.1 740,471 + -0.5 740,479 - +0.6 740,479 - +0.9 740,479 - +1.1 740,479 - +0.7 740,479 - -0.6 740,527 - +1.1 740,541 - CCNA_00684 0.11 +1.2 740,546 - CCNA_00684 0.11 +1.3 741,113 - +1.3 741,113 - +0.9 741,126 - +1.0 741,127 - +0.4 741,134 + -0.7 741,142 - +1.2 741,142 - +1.8 741,142 - +0.7 741,142 - +0.5 741,192 + CCNA_00685 0.14 +0.5 741,233 - CCNA_00685 0.20 -0.1 741,245 - CCNA_00685 0.22 +0.5 741,256 + CCNA_00685 0.24 +1.0 741,256 + CCNA_00685 0.24 -0.7 741,256 + CCNA_00685 0.24 -0.0 741,256 + CCNA_00685 0.24 -1.3 741,271 + CCNA_00685 0.26 -0.8 741,274 - CCNA_00685 0.27 -0.3 741,286 - CCNA_00685 0.29 +0.2 741,307 - CCNA_00685 0.32 +0.3 741,345 - CCNA_00685 0.38 -1.4 741,358 - CCNA_00685 0.40 +0.4 741,370 - CCNA_00685 0.42 -1.2 741,371 - CCNA_00685 0.43 +0.3 741,376 + CCNA_00685 0.43 -1.8 741,383 + CCNA_00685 0.44 -0.2 741,399 - CCNA_00685 0.47 -0.7 741,438 + CCNA_00685 0.53 +0.1 741,438 + CCNA_00685 0.53 -2.5 741,552 + CCNA_00685 0.72 -1.1 741,575 + CCNA_00685 0.76 -0.2 741,583 - CCNA_00685 0.77 -0.4 741,593 + CCNA_00685 0.78 -0.2 741,612 + CCNA_00685 0.82 -0.4 741,649 + CCNA_00685 0.88 -1.7 741,659 + CCNA_00685 0.89 -0.5 741,662 - CCNA_00685 0.90 -0.5 741,662 - CCNA_00685 0.90 +0.8 741,672 - -0.4 741,674 - -1.4 741,710 - -0.6 741,727 + +0.2 741,735 - -0.4 741,742 - -0.9 741,802 - -0.3 741,818 + -1.4 741,819 + +0.5 741,825 + -0.6 741,825 + +0.4 741,840 - +0.9 741,883 + +0.1 741,896 - +1.1 741,915 - -0.7 741,915 - +0.5 741,915 - -1.8 741,986 + -0.5 741,986 + -1.2 742,013 + -0.2 742,025 + +1.9 742,030 + +1.3 742,041 + CCNA_00686 0.10 -1.5 742,045 + CCNA_00686 0.10 -0.3 742,046 + CCNA_00686 0.10 -0.9 742,061 + +1.7 742,061 + CCNA_00686 0.11 -0.2 742,061 + CCNA_00686 0.11 -1.2 742,061 + CCNA_00686 0.11 -0.3 742,061 + CCNA_00686 0.11 +1.3 742,069 - CCNA_00686 0.12 +0.8 742,069 - CCNA_00686 0.12 +1.1 742,069 - CCNA_00686 0.12 +2.0 742,069 - CCNA_00686 0.12 +0.3 742,069 - CCNA_00686 0.12 -0.1 742,069 - CCNA_00686 0.12 -2.2 742,069 - CCNA_00686 0.12 -2.0 742,069 - CCNA_00686 0.12 -0.1 742,085 + CCNA_00686 0.13 -1.8 742,093 - CCNA_00686 0.14 +1.0 742,108 + CCNA_00686 0.15 +0.3 742,108 + CCNA_00686 0.15 +0.4 742,116 - CCNA_00686 0.15 -0.7 742,116 - CCNA_00686 0.15 +0.5 742,116 - CCNA_00686 0.15 +0.1 742,116 - CCNA_00686 0.15 +1.0 742,116 - CCNA_00686 0.15 -0.5 742,123 + CCNA_00686 0.16 -0.2 742,125 - CCNA_00686 0.16 +0.1 742,126 - CCNA_00686 0.16 -0.5 742,131 - CCNA_00686 0.16 +0.4 742,150 - CCNA_00686 0.18 -1.3 742,150 - CCNA_00686 0.18 +0.3 742,212 + CCNA_00686 0.22 -2.0 742,222 - CCNA_00686 0.23 -0.4 742,252 + CCNA_00686 0.25 -0.4 742,257 + CCNA_00686 0.25 +0.3 742,272 - CCNA_00686 0.26 -0.0 742,291 + CCNA_00686 0.27 -0.0 742,291 + CCNA_00686 0.27 -1.0 742,299 - CCNA_00686 0.28 -1.1 742,328 + CCNA_00686 0.30 -0.3 742,333 - CCNA_00686 0.30 +1.1 742,351 + CCNA_00686 0.32 -0.8 742,359 + CCNA_00686 0.32 -1.0 742,364 + CCNA_00686 0.33 -0.1 742,369 + +3.9 742,411 - CCNA_00686 0.36 -0.0 742,417 + CCNA_00686 0.36 -1.6 742,418 - CCNA_00686 0.36 -0.1 742,457 + CCNA_00686 0.39 -1.0 742,502 + CCNA_00686 0.42 -0.4 742,552 + CCNA_00686 0.46 -0.8 742,560 - CCNA_00686 0.46 -1.8 742,610 + CCNA_00686 0.50 -0.7 742,610 + CCNA_00686 0.50 -0.6 742,610 + CCNA_00686 0.50 -0.8 742,610 + CCNA_00686 0.50 +0.5 742,617 + CCNA_00686 0.50 -1.5 742,618 - CCNA_00686 0.50 +0.1 742,618 - CCNA_00686 0.50 -0.6 742,644 + CCNA_00686 0.52 -0.0 742,644 + CCNA_00686 0.52 -0.5 742,652 - CCNA_00686 0.53 -0.8 742,652 - CCNA_00686 0.53 -0.6 742,666 - CCNA_00686 0.54 +0.1 742,668 - CCNA_00686 0.54 +0.4 742,670 + CCNA_00686 0.54 -1.8
Or see this region's nucleotide sequence