Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_835

Experiment: Bacitracin 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_833 and Ac3H11_834 are separated by 54 nucleotidesAc3H11_834 and Ac3H11_835 are separated by 159 nucleotidesAc3H11_835 and Ac3H11_836 are separated by 44 nucleotides Ac3H11_833 - 2-keto-4-pentenoate hydratase (EC 4.2.1.80), at 116,717 to 117,511 _833 Ac3H11_834 - putative signal peptide protein, at 117,566 to 118,021 _834 Ac3H11_835 - hypothetical protein, at 118,181 to 118,561 _835 Ac3H11_836 - Ubiquinone biosynthesis monooxygenase UbiB, at 118,606 to 119,946 _836 Position (kb) 118 119Strain fitness (log2 ratio) -2 -1 0 1 2 3at 117.730 kb on - strand, within Ac3H11_834at 117.735 kb on + strand, within Ac3H11_834at 117.736 kb on - strand, within Ac3H11_834at 117.873 kb on + strand, within Ac3H11_834at 117.873 kb on + strand, within Ac3H11_834at 117.874 kb on - strand, within Ac3H11_834at 117.874 kb on - strand, within Ac3H11_834at 117.874 kb on - strand, within Ac3H11_834at 117.874 kb on - strand, within Ac3H11_834at 117.874 kb on - strand, within Ac3H11_834at 117.995 kb on + strandat 117.996 kb on - strandat 117.996 kb on - strandat 118.092 kb on + strandat 118.092 kb on + strandat 118.092 kb on + strandat 118.092 kb on + strandat 118.093 kb on - strandat 118.093 kb on - strandat 118.093 kb on - strandat 118.093 kb on - strandat 118.093 kb on - strandat 118.093 kb on - strandat 118.093 kb on - strandat 118.555 kb on + strandat 118.555 kb on + strandat 118.555 kb on + strandat 118.555 kb on + strandat 118.555 kb on + strandat 118.555 kb on + strandat 118.555 kb on + strandat 118.555 kb on + strandat 118.555 kb on + strandat 118.555 kb on + strandat 118.555 kb on + strandat 118.555 kb on + strandat 118.555 kb on + strandat 118.555 kb on + strandat 118.555 kb on + strandat 118.555 kb on + strandat 118.556 kb on - strandat 118.556 kb on - strandat 118.556 kb on - strandat 118.556 kb on - strandat 118.556 kb on - strandat 118.556 kb on - strandat 118.556 kb on - strandat 118.556 kb on - strandat 118.556 kb on - strandat 118.556 kb on - strandat 118.556 kb on - strandat 118.556 kb on - strandat 118.556 kb on - strandat 118.556 kb on - strandat 118.556 kb on - strandat 118.880 kb on + strand, within Ac3H11_836at 118.880 kb on + strand, within Ac3H11_836at 118.880 kb on + strand, within Ac3H11_836at 118.880 kb on + strand, within Ac3H11_836at 118.881 kb on - strand, within Ac3H11_836at 118.881 kb on - strand, within Ac3H11_836at 118.881 kb on - strand, within Ac3H11_836at 118.881 kb on - strand, within Ac3H11_836at 118.925 kb on + strandat 118.926 kb on - strand, within Ac3H11_836at 119.339 kb on + strand, within Ac3H11_836at 119.339 kb on + strand, within Ac3H11_836at 119.340 kb on - strand, within Ac3H11_836at 119.340 kb on - strand, within Ac3H11_836at 119.340 kb on - strand, within Ac3H11_836at 119.492 kb on + strand, within Ac3H11_836at 119.492 kb on + strand, within Ac3H11_836at 119.492 kb on + strand, within Ac3H11_836at 119.492 kb on + strand, within Ac3H11_836at 119.493 kb on - strand, within Ac3H11_836

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.032 mg/ml
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117,730 - Ac3H11_834 0.36 +0.2
117,735 + Ac3H11_834 0.37 -0.3
117,736 - Ac3H11_834 0.37 -0.2
117,873 + Ac3H11_834 0.67 -1.0
117,873 + Ac3H11_834 0.67 -0.2
117,874 - Ac3H11_834 0.68 -0.2
117,874 - Ac3H11_834 0.68 -0.7
117,874 - Ac3H11_834 0.68 -1.0
117,874 - Ac3H11_834 0.68 +1.0
117,874 - Ac3H11_834 0.68 +0.8
117,995 + +0.3
117,996 - -1.4
117,996 - +0.2
118,092 + -0.6
118,092 + -0.4
118,092 + -1.7
118,092 + -0.6
118,093 - -0.1
118,093 - +1.5
118,093 - -0.6
118,093 - +0.5
118,093 - -0.7
118,093 - +0.7
118,093 - -1.2
118,555 + -2.2
118,555 + -0.1
118,555 + -0.2
118,555 + -0.6
118,555 + -1.4
118,555 + +1.1
118,555 + -1.9
118,555 + +1.4
118,555 + -0.8
118,555 + -1.1
118,555 + +0.2
118,555 + +3.3
118,555 + -2.5
118,555 + +0.3
118,555 + +0.4
118,555 + +1.1
118,556 - -2.4
118,556 - -0.8
118,556 - -2.0
118,556 - -0.2
118,556 - +0.0
118,556 - +0.5
118,556 - -0.6
118,556 - +0.1
118,556 - -1.3
118,556 - -1.6
118,556 - -1.0
118,556 - -1.7
118,556 - +0.7
118,556 - +0.3
118,556 - -1.4
118,880 + Ac3H11_836 0.20 -0.1
118,880 + Ac3H11_836 0.20 -0.8
118,880 + Ac3H11_836 0.20 +0.4
118,880 + Ac3H11_836 0.20 -0.6
118,881 - Ac3H11_836 0.21 -1.4
118,881 - Ac3H11_836 0.21 -0.3
118,881 - Ac3H11_836 0.21 -1.9
118,881 - Ac3H11_836 0.21 -0.4
118,925 + +0.7
118,926 - Ac3H11_836 0.24 -0.6
119,339 + Ac3H11_836 0.55 -0.7
119,339 + Ac3H11_836 0.55 -0.4
119,340 - Ac3H11_836 0.55 -0.5
119,340 - Ac3H11_836 0.55 +0.0
119,340 - Ac3H11_836 0.55 +0.3
119,492 + Ac3H11_836 0.66 -1.9
119,492 + Ac3H11_836 0.66 -0.2
119,492 + Ac3H11_836 0.66 +0.6
119,492 + Ac3H11_836 0.66 +0.7
119,493 - Ac3H11_836 0.66 -1.6

Or see this region's nucleotide sequence