Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_73

Experiment: Bacitracin 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_72 and Ac3H11_73 are separated by 215 nucleotidesAc3H11_73 and Ac3H11_74 are separated by 27 nucleotidesAc3H11_74 and Ac3H11_75 are separated by 111 nucleotidesAc3H11_75 and Ac3H11_76 are separated by 8 nucleotides Ac3H11_72 - D-(-)-3-hydroxybutyrate oligomer hydrolase, at 76,316 to 77,191 _72 Ac3H11_73 - Phenylalanyl-tRNA synthetase beta subunit, at 77,407 to 77,874 _73 Ac3H11_74 - hypothetical protein, at 77,902 to 78,144 _74 Ac3H11_75 - Outer membrane lipoprotein blc precursor, at 78,256 to 78,822 _75 Ac3H11_76 - COG3380: Amine oxidase, flavin-containing, at 78,831 to 79,835 _76 Position (kb) 77 78Strain fitness (log2 ratio) -2 -1 0 1 2at 76.547 kb on + strand, within Ac3H11_72at 76.764 kb on - strand, within Ac3H11_72at 76.826 kb on + strand, within Ac3H11_72at 76.826 kb on + strand, within Ac3H11_72at 76.826 kb on + strand, within Ac3H11_72at 76.826 kb on + strand, within Ac3H11_72at 76.965 kb on - strand, within Ac3H11_72at 76.983 kb on - strand, within Ac3H11_72at 77.241 kb on - strandat 77.241 kb on - strandat 77.241 kb on - strandat 77.241 kb on - strandat 77.267 kb on + strandat 77.268 kb on - strandat 77.367 kb on + strandat 77.473 kb on + strand, within Ac3H11_73at 77.474 kb on - strand, within Ac3H11_73at 77.474 kb on - strand, within Ac3H11_73at 77.474 kb on - strand, within Ac3H11_73at 77.474 kb on - strand, within Ac3H11_73at 77.668 kb on + strand, within Ac3H11_73at 77.668 kb on + strand, within Ac3H11_73at 77.678 kb on - strand, within Ac3H11_73at 77.866 kb on + strandat 77.866 kb on + strandat 77.867 kb on - strandat 77.867 kb on - strandat 77.872 kb on + strandat 77.873 kb on - strandat 78.012 kb on - strand, within Ac3H11_74at 78.012 kb on - strand, within Ac3H11_74at 78.123 kb on - strandat 78.155 kb on + strandat 78.255 kb on + strandat 78.466 kb on + strand, within Ac3H11_75at 78.467 kb on - strand, within Ac3H11_75at 78.467 kb on - strand, within Ac3H11_75at 78.613 kb on + strand, within Ac3H11_75at 78.622 kb on + strand, within Ac3H11_75at 78.649 kb on + strand, within Ac3H11_75at 78.685 kb on + strand, within Ac3H11_75at 78.685 kb on + strand, within Ac3H11_75at 78.685 kb on + strand, within Ac3H11_75at 78.686 kb on - strand, within Ac3H11_75at 78.686 kb on - strand, within Ac3H11_75at 78.830 kb on + strandat 78.830 kb on + strandat 78.830 kb on + strandat 78.831 kb on - strandat 78.831 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.032 mg/ml
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76,547 + Ac3H11_72 0.26 -0.4
76,764 - Ac3H11_72 0.51 -1.1
76,826 + Ac3H11_72 0.58 -0.3
76,826 + Ac3H11_72 0.58 -0.5
76,826 + Ac3H11_72 0.58 -0.4
76,826 + Ac3H11_72 0.58 +0.3
76,965 - Ac3H11_72 0.74 -0.1
76,983 - Ac3H11_72 0.76 +0.2
77,241 - +0.4
77,241 - -1.1
77,241 - +0.3
77,241 - -1.8
77,267 + +0.0
77,268 - +0.6
77,367 + +0.9
77,473 + Ac3H11_73 0.14 +0.5
77,474 - Ac3H11_73 0.14 -1.4
77,474 - Ac3H11_73 0.14 -0.5
77,474 - Ac3H11_73 0.14 +0.3
77,474 - Ac3H11_73 0.14 +0.2
77,668 + Ac3H11_73 0.56 +0.5
77,668 + Ac3H11_73 0.56 +1.2
77,678 - Ac3H11_73 0.58 +0.2
77,866 + +0.6
77,866 + +0.7
77,867 - +0.7
77,867 - -2.1
77,872 + -0.6
77,873 - -0.1
78,012 - Ac3H11_74 0.45 +1.5
78,012 - Ac3H11_74 0.45 +2.2
78,123 - -1.0
78,155 + +1.2
78,255 + -0.6
78,466 + Ac3H11_75 0.37 +0.1
78,467 - Ac3H11_75 0.37 +1.3
78,467 - Ac3H11_75 0.37 -1.2
78,613 + Ac3H11_75 0.63 -0.7
78,622 + Ac3H11_75 0.65 +1.4
78,649 + Ac3H11_75 0.69 +0.2
78,685 + Ac3H11_75 0.76 -0.5
78,685 + Ac3H11_75 0.76 -0.5
78,685 + Ac3H11_75 0.76 -0.0
78,686 - Ac3H11_75 0.76 +0.2
78,686 - Ac3H11_75 0.76 -1.1
78,830 + -0.9
78,830 + -2.0
78,830 + -2.4
78,831 - -0.1
78,831 - +0.7

Or see this region's nucleotide sequence