Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_4494

Experiment: Bacitracin 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_4493 and Ac3H11_4494 are separated by 20 nucleotidesAc3H11_4494 and Ac3H11_4495 overlap by 4 nucleotidesAc3H11_4495 and Ac3H11_4496 are separated by 153 nucleotides Ac3H11_4493 - Respiratory nitrate reductase beta chain (EC 1.7.99.4), at 85,590 to 87,113 _4493 Ac3H11_4494 - Respiratory nitrate reductase delta chain (EC 1.7.99.4), at 87,134 to 87,835 _4494 Ac3H11_4495 - Respiratory nitrate reductase gamma chain (EC 1.7.99.4), at 87,832 to 88,563 _4495 Ac3H11_4496 - PpiC-type peptidyl-prolyl cis-trans isomerase, at 88,717 to 89,550 _4496 Position (kb) 87 88Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 86.190 kb on + strand, within Ac3H11_4493at 86.191 kb on - strand, within Ac3H11_4493at 86.271 kb on + strand, within Ac3H11_4493at 86.271 kb on + strand, within Ac3H11_4493at 86.272 kb on - strand, within Ac3H11_4493at 86.272 kb on - strand, within Ac3H11_4493at 86.272 kb on - strand, within Ac3H11_4493at 86.283 kb on + strand, within Ac3H11_4493at 86.283 kb on + strand, within Ac3H11_4493at 86.287 kb on - strand, within Ac3H11_4493at 86.287 kb on - strand, within Ac3H11_4493at 86.410 kb on - strand, within Ac3H11_4493at 86.463 kb on + strand, within Ac3H11_4493at 86.464 kb on - strand, within Ac3H11_4493at 86.577 kb on + strand, within Ac3H11_4493at 86.649 kb on + strand, within Ac3H11_4493at 86.649 kb on + strand, within Ac3H11_4493at 86.649 kb on + strand, within Ac3H11_4493at 86.649 kb on + strand, within Ac3H11_4493at 86.650 kb on - strand, within Ac3H11_4493at 86.650 kb on - strand, within Ac3H11_4493at 86.650 kb on - strand, within Ac3H11_4493at 86.650 kb on - strand, within Ac3H11_4493at 86.751 kb on + strand, within Ac3H11_4493at 86.829 kb on + strand, within Ac3H11_4493at 86.830 kb on - strand, within Ac3H11_4493at 86.916 kb on + strand, within Ac3H11_4493at 86.916 kb on + strand, within Ac3H11_4493at 86.916 kb on + strand, within Ac3H11_4493at 86.916 kb on + strand, within Ac3H11_4493at 86.916 kb on + strand, within Ac3H11_4493at 86.916 kb on + strand, within Ac3H11_4493at 86.916 kb on + strand, within Ac3H11_4493at 86.916 kb on + strand, within Ac3H11_4493at 86.917 kb on - strand, within Ac3H11_4493at 86.917 kb on - strand, within Ac3H11_4493at 86.917 kb on - strand, within Ac3H11_4493at 86.917 kb on - strand, within Ac3H11_4493at 86.917 kb on - strand, within Ac3H11_4493at 86.940 kb on + strand, within Ac3H11_4493at 86.940 kb on + strand, within Ac3H11_4493at 86.940 kb on + strand, within Ac3H11_4493at 86.941 kb on - strand, within Ac3H11_4493at 86.941 kb on - strand, within Ac3H11_4493at 86.941 kb on - strand, within Ac3H11_4493at 86.941 kb on - strand, within Ac3H11_4493at 86.941 kb on - strand, within Ac3H11_4493at 86.980 kb on - strandat 87.098 kb on + strandat 87.098 kb on + strandat 87.185 kb on + strandat 87.270 kb on + strand, within Ac3H11_4494at 87.344 kb on + strand, within Ac3H11_4494at 87.345 kb on - strand, within Ac3H11_4494at 87.452 kb on + strand, within Ac3H11_4494at 87.452 kb on + strand, within Ac3H11_4494at 87.453 kb on - strand, within Ac3H11_4494at 87.453 kb on - strand, within Ac3H11_4494at 87.620 kb on + strand, within Ac3H11_4494at 87.620 kb on + strand, within Ac3H11_4494at 87.850 kb on - strandat 87.868 kb on + strandat 87.868 kb on + strandat 87.868 kb on + strandat 87.868 kb on + strandat 87.868 kb on + strandat 87.868 kb on + strandat 87.868 kb on + strandat 87.868 kb on + strandat 87.868 kb on + strandat 87.868 kb on + strandat 87.868 kb on + strandat 87.869 kb on - strandat 87.869 kb on - strandat 87.869 kb on - strandat 87.869 kb on - strandat 87.869 kb on - strandat 87.869 kb on - strandat 87.869 kb on - strandat 87.869 kb on - strandat 87.869 kb on - strandat 87.874 kb on + strandat 87.875 kb on - strandat 87.875 kb on - strandat 87.875 kb on - strandat 87.876 kb on + strandat 87.876 kb on + strandat 87.877 kb on - strandat 87.877 kb on - strandat 87.877 kb on - strandat 87.877 kb on - strandat 87.932 kb on - strand, within Ac3H11_4495at 87.932 kb on - strand, within Ac3H11_4495at 87.932 kb on - strand, within Ac3H11_4495at 88.063 kb on + strand, within Ac3H11_4495at 88.063 kb on + strand, within Ac3H11_4495at 88.063 kb on + strand, within Ac3H11_4495at 88.063 kb on + strand, within Ac3H11_4495at 88.395 kb on + strand, within Ac3H11_4495at 88.395 kb on + strand, within Ac3H11_4495at 88.395 kb on + strand, within Ac3H11_4495at 88.395 kb on + strand, within Ac3H11_4495at 88.396 kb on - strand, within Ac3H11_4495at 88.396 kb on - strand, within Ac3H11_4495at 88.396 kb on - strand, within Ac3H11_4495at 88.396 kb on - strand, within Ac3H11_4495at 88.396 kb on - strand, within Ac3H11_4495at 88.477 kb on + strand, within Ac3H11_4495at 88.477 kb on + strand, within Ac3H11_4495at 88.477 kb on + strand, within Ac3H11_4495at 88.478 kb on - strand, within Ac3H11_4495at 88.478 kb on - strand, within Ac3H11_4495at 88.478 kb on - strand, within Ac3H11_4495at 88.478 kb on - strand, within Ac3H11_4495at 88.478 kb on - strand, within Ac3H11_4495at 88.696 kb on + strandat 88.697 kb on - strandat 88.697 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.032 mg/ml
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86,190 + Ac3H11_4493 0.39 -1.9
86,191 - Ac3H11_4493 0.39 +0.8
86,271 + Ac3H11_4493 0.45 +1.1
86,271 + Ac3H11_4493 0.45 +0.5
86,272 - Ac3H11_4493 0.45 -0.4
86,272 - Ac3H11_4493 0.45 -1.3
86,272 - Ac3H11_4493 0.45 -1.1
86,283 + Ac3H11_4493 0.45 -0.0
86,283 + Ac3H11_4493 0.45 +1.3
86,287 - Ac3H11_4493 0.46 +0.1
86,287 - Ac3H11_4493 0.46 +1.9
86,410 - Ac3H11_4493 0.54 -1.1
86,463 + Ac3H11_4493 0.57 +1.5
86,464 - Ac3H11_4493 0.57 -0.8
86,577 + Ac3H11_4493 0.65 -0.1
86,649 + Ac3H11_4493 0.69 +1.0
86,649 + Ac3H11_4493 0.69 +1.3
86,649 + Ac3H11_4493 0.69 +1.3
86,649 + Ac3H11_4493 0.69 -0.5
86,650 - Ac3H11_4493 0.70 +0.3
86,650 - Ac3H11_4493 0.70 -2.0
86,650 - Ac3H11_4493 0.70 +0.4
86,650 - Ac3H11_4493 0.70 +0.5
86,751 + Ac3H11_4493 0.76 +2.2
86,829 + Ac3H11_4493 0.81 +0.7
86,830 - Ac3H11_4493 0.81 -1.2
86,916 + Ac3H11_4493 0.87 -0.2
86,916 + Ac3H11_4493 0.87 +0.9
86,916 + Ac3H11_4493 0.87 +0.7
86,916 + Ac3H11_4493 0.87 +1.4
86,916 + Ac3H11_4493 0.87 -0.2
86,916 + Ac3H11_4493 0.87 +0.4
86,916 + Ac3H11_4493 0.87 +0.1
86,916 + Ac3H11_4493 0.87 +0.0
86,917 - Ac3H11_4493 0.87 +2.6
86,917 - Ac3H11_4493 0.87 -0.1
86,917 - Ac3H11_4493 0.87 +0.2
86,917 - Ac3H11_4493 0.87 -2.6
86,917 - Ac3H11_4493 0.87 +1.6
86,940 + Ac3H11_4493 0.89 -0.5
86,940 + Ac3H11_4493 0.89 +0.9
86,940 + Ac3H11_4493 0.89 +0.7
86,941 - Ac3H11_4493 0.89 +0.1
86,941 - Ac3H11_4493 0.89 -1.7
86,941 - Ac3H11_4493 0.89 +0.8
86,941 - Ac3H11_4493 0.89 -1.8
86,941 - Ac3H11_4493 0.89 +0.3
86,980 - -0.2
87,098 + +1.2
87,098 + +0.7
87,185 + +1.1
87,270 + Ac3H11_4494 0.19 -1.4
87,344 + Ac3H11_4494 0.30 -0.3
87,345 - Ac3H11_4494 0.30 -0.3
87,452 + Ac3H11_4494 0.45 +1.3
87,452 + Ac3H11_4494 0.45 -0.2
87,453 - Ac3H11_4494 0.45 +0.2
87,453 - Ac3H11_4494 0.45 +0.5
87,620 + Ac3H11_4494 0.69 -1.3
87,620 + Ac3H11_4494 0.69 +0.5
87,850 - -1.2
87,868 + +1.1
87,868 + +0.6
87,868 + +0.2
87,868 + +1.4
87,868 + +0.9
87,868 + +0.2
87,868 + +0.7
87,868 + +1.8
87,868 + +0.1
87,868 + -0.1
87,868 + -1.3
87,869 - +0.1
87,869 - -1.7
87,869 - -0.4
87,869 - +0.1
87,869 - -0.7
87,869 - -0.0
87,869 - +0.2
87,869 - +0.7
87,869 - +0.7
87,874 + +1.1
87,875 - +0.4
87,875 - +1.1
87,875 - -1.8
87,876 + +0.2
87,876 + -2.4
87,877 - +1.1
87,877 - +0.4
87,877 - -0.0
87,877 - -0.7
87,932 - Ac3H11_4495 0.14 -2.3
87,932 - Ac3H11_4495 0.14 +0.7
87,932 - Ac3H11_4495 0.14 +1.3
88,063 + Ac3H11_4495 0.32 +0.2
88,063 + Ac3H11_4495 0.32 -0.3
88,063 + Ac3H11_4495 0.32 +0.6
88,063 + Ac3H11_4495 0.32 +0.3
88,395 + Ac3H11_4495 0.77 -1.1
88,395 + Ac3H11_4495 0.77 +0.5
88,395 + Ac3H11_4495 0.77 +0.6
88,395 + Ac3H11_4495 0.77 -3.1
88,396 - Ac3H11_4495 0.77 +2.0
88,396 - Ac3H11_4495 0.77 -1.6
88,396 - Ac3H11_4495 0.77 -0.3
88,396 - Ac3H11_4495 0.77 +0.9
88,396 - Ac3H11_4495 0.77 +1.1
88,477 + Ac3H11_4495 0.88 -0.4
88,477 + Ac3H11_4495 0.88 +0.1
88,477 + Ac3H11_4495 0.88 +0.4
88,478 - Ac3H11_4495 0.88 +0.5
88,478 - Ac3H11_4495 0.88 +0.4
88,478 - Ac3H11_4495 0.88 -0.3
88,478 - Ac3H11_4495 0.88 +0.5
88,478 - Ac3H11_4495 0.88 +0.4
88,696 + +1.6
88,697 - +1.4
88,697 - +1.0

Or see this region's nucleotide sequence