Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3722

Experiment: Bacitracin 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3720 and Ac3H11_3721 are separated by 583 nucleotidesAc3H11_3721 and Ac3H11_3722 are separated by 59 nucleotidesAc3H11_3722 and Ac3H11_3723 are separated by 243 nucleotides Ac3H11_3720 - Uncharacterized PLP-dependent aminotransferase YfdZ, at 79,778 to 81,004 _3720 Ac3H11_3721 - hypothetical protein, at 81,588 to 81,779 _3721 Ac3H11_3722 - Urease accessory protein UreD, at 81,839 to 82,675 _3722 Ac3H11_3723 - FAD/FMN-containing dehydrogenase, at 82,919 to 84,307 _3723 Position (kb) 81 82 83Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 80.888 kb on + strandat 80.888 kb on + strandat 80.888 kb on + strandat 80.888 kb on + strandat 80.888 kb on + strandat 80.888 kb on + strandat 80.888 kb on + strandat 80.889 kb on - strandat 80.889 kb on - strandat 80.889 kb on - strandat 80.889 kb on - strandat 80.889 kb on - strandat 80.889 kb on - strandat 80.889 kb on - strandat 81.007 kb on + strandat 81.007 kb on + strandat 81.007 kb on + strandat 81.007 kb on + strandat 81.007 kb on + strandat 81.008 kb on - strandat 81.008 kb on - strandat 81.036 kb on + strandat 81.037 kb on - strandat 81.037 kb on - strandat 81.131 kb on + strandat 81.131 kb on + strandat 81.172 kb on + strandat 81.172 kb on + strandat 81.173 kb on - strandat 81.173 kb on - strandat 81.173 kb on - strandat 81.173 kb on - strandat 81.173 kb on - strandat 81.203 kb on - strandat 81.203 kb on - strandat 81.203 kb on - strandat 81.214 kb on + strandat 81.215 kb on - strandat 81.215 kb on - strandat 81.215 kb on - strandat 81.215 kb on - strandat 81.299 kb on + strandat 81.299 kb on + strandat 81.300 kb on - strandat 81.325 kb on + strandat 81.368 kb on - strandat 81.389 kb on + strandat 81.390 kb on - strandat 81.390 kb on - strandat 81.410 kb on + strandat 81.410 kb on + strandat 81.410 kb on + strandat 81.410 kb on + strandat 81.410 kb on + strandat 81.411 kb on - strandat 81.411 kb on - strandat 81.432 kb on + strandat 81.432 kb on + strandat 81.433 kb on - strandat 81.433 kb on - strandat 81.436 kb on + strandat 81.436 kb on + strandat 81.436 kb on + strandat 81.437 kb on - strandat 81.437 kb on - strandat 81.541 kb on + strandat 81.541 kb on + strandat 81.541 kb on + strandat 81.541 kb on + strandat 81.542 kb on - strandat 81.542 kb on - strandat 81.636 kb on + strand, within Ac3H11_3721at 81.637 kb on - strand, within Ac3H11_3721at 81.690 kb on + strand, within Ac3H11_3721at 81.690 kb on + strand, within Ac3H11_3721at 81.691 kb on - strand, within Ac3H11_3721at 81.691 kb on - strand, within Ac3H11_3721at 81.711 kb on + strand, within Ac3H11_3721at 81.712 kb on - strand, within Ac3H11_3721at 81.712 kb on - strand, within Ac3H11_3721at 81.712 kb on - strand, within Ac3H11_3721at 81.712 kb on - strand, within Ac3H11_3721at 81.712 kb on - strand, within Ac3H11_3721at 81.712 kb on - strand, within Ac3H11_3721at 81.713 kb on + strand, within Ac3H11_3721at 81.713 kb on + strand, within Ac3H11_3721at 81.713 kb on + strand, within Ac3H11_3721at 81.713 kb on + strand, within Ac3H11_3721at 81.713 kb on + strand, within Ac3H11_3721at 81.713 kb on + strand, within Ac3H11_3721at 81.713 kb on + strand, within Ac3H11_3721at 81.714 kb on - strand, within Ac3H11_3721at 81.714 kb on - strand, within Ac3H11_3721at 81.714 kb on - strand, within Ac3H11_3721at 81.714 kb on - strand, within Ac3H11_3721at 81.714 kb on - strand, within Ac3H11_3721at 81.714 kb on - strand, within Ac3H11_3721at 81.779 kb on + strandat 81.779 kb on + strandat 81.779 kb on + strandat 81.779 kb on + strandat 81.779 kb on + strandat 81.780 kb on - strandat 81.780 kb on - strandat 81.780 kb on - strandat 81.780 kb on - strandat 81.780 kb on - strandat 81.840 kb on + strandat 81.840 kb on + strandat 81.840 kb on + strandat 81.840 kb on + strandat 81.841 kb on - strandat 82.335 kb on + strand, within Ac3H11_3722at 82.428 kb on + strand, within Ac3H11_3722at 82.570 kb on - strand, within Ac3H11_3722at 82.630 kb on + strandat 82.630 kb on + strandat 82.630 kb on + strandat 82.630 kb on + strandat 82.631 kb on - strandat 82.631 kb on - strandat 82.631 kb on - strandat 82.645 kb on - strandat 82.695 kb on + strandat 82.971 kb on + strandat 82.972 kb on - strandat 83.079 kb on + strand, within Ac3H11_3723at 83.079 kb on + strand, within Ac3H11_3723at 83.079 kb on + strand, within Ac3H11_3723at 83.079 kb on + strand, within Ac3H11_3723at 83.079 kb on + strand, within Ac3H11_3723at 83.080 kb on - strand, within Ac3H11_3723at 83.080 kb on - strand, within Ac3H11_3723at 83.080 kb on - strand, within Ac3H11_3723at 83.080 kb on - strand, within Ac3H11_3723at 83.119 kb on - strand, within Ac3H11_3723at 83.119 kb on - strand, within Ac3H11_3723at 83.304 kb on + strand, within Ac3H11_3723at 83.304 kb on + strand, within Ac3H11_3723at 83.304 kb on + strand, within Ac3H11_3723at 83.305 kb on - strand, within Ac3H11_3723at 83.305 kb on - strand, within Ac3H11_3723at 83.305 kb on - strand, within Ac3H11_3723at 83.305 kb on - strand, within Ac3H11_3723at 83.305 kb on - strand, within Ac3H11_3723at 83.305 kb on - strand, within Ac3H11_3723at 83.359 kb on - strand, within Ac3H11_3723at 83.359 kb on - strand, within Ac3H11_3723at 83.410 kb on - strand, within Ac3H11_3723at 83.529 kb on + strand, within Ac3H11_3723at 83.529 kb on + strand, within Ac3H11_3723at 83.530 kb on - strand, within Ac3H11_3723

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.032 mg/ml
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80,888 + +0.7
80,888 + +0.8
80,888 + +1.0
80,888 + -0.3
80,888 + -0.2
80,888 + +0.7
80,888 + +0.1
80,889 - -1.0
80,889 - -0.6
80,889 - -0.4
80,889 - -0.9
80,889 - +0.8
80,889 - +3.5
80,889 - +1.5
81,007 + -0.2
81,007 + +0.1
81,007 + -0.9
81,007 + +0.4
81,007 + +0.9
81,008 - +0.3
81,008 - +1.0
81,036 + +0.3
81,037 - -0.5
81,037 - -0.2
81,131 + +0.1
81,131 + -0.7
81,172 + -1.7
81,172 + -2.4
81,173 - -0.2
81,173 - -0.9
81,173 - +1.2
81,173 - +0.7
81,173 - +0.5
81,203 - +0.2
81,203 - -1.3
81,203 - +0.2
81,214 + +0.0
81,215 - +0.7
81,215 - -0.7
81,215 - +0.5
81,215 - -2.9
81,299 + +1.0
81,299 + +0.4
81,300 - -0.4
81,325 + -0.3
81,368 - +0.9
81,389 + +0.5
81,390 - +0.0
81,390 - -0.1
81,410 + -0.1
81,410 + -0.5
81,410 + -0.2
81,410 + -0.6
81,410 + +0.9
81,411 - +1.4
81,411 - +0.6
81,432 + +0.8
81,432 + -1.8
81,433 - -0.7
81,433 - -0.4
81,436 + -0.6
81,436 + -0.3
81,436 + +1.3
81,437 - +0.2
81,437 - +0.6
81,541 + -0.2
81,541 + +0.3
81,541 + -2.2
81,541 + -0.5
81,542 - +1.6
81,542 - +0.3
81,636 + Ac3H11_3721 0.25 -0.7
81,637 - Ac3H11_3721 0.26 +1.1
81,690 + Ac3H11_3721 0.53 +1.6
81,690 + Ac3H11_3721 0.53 -0.4
81,691 - Ac3H11_3721 0.54 +0.4
81,691 - Ac3H11_3721 0.54 +0.3
81,711 + Ac3H11_3721 0.64 -1.6
81,712 - Ac3H11_3721 0.65 +0.6
81,712 - Ac3H11_3721 0.65 +0.1
81,712 - Ac3H11_3721 0.65 -0.7
81,712 - Ac3H11_3721 0.65 +4.2
81,712 - Ac3H11_3721 0.65 +0.4
81,712 - Ac3H11_3721 0.65 +0.0
81,713 + Ac3H11_3721 0.65 -1.1
81,713 + Ac3H11_3721 0.65 +0.3
81,713 + Ac3H11_3721 0.65 +0.1
81,713 + Ac3H11_3721 0.65 +1.1
81,713 + Ac3H11_3721 0.65 -0.6
81,713 + Ac3H11_3721 0.65 +0.3
81,713 + Ac3H11_3721 0.65 -0.1
81,714 - Ac3H11_3721 0.66 -0.1
81,714 - Ac3H11_3721 0.66 +1.0
81,714 - Ac3H11_3721 0.66 +0.6
81,714 - Ac3H11_3721 0.66 -0.2
81,714 - Ac3H11_3721 0.66 -0.3
81,714 - Ac3H11_3721 0.66 +1.0
81,779 + +1.1
81,779 + +0.6
81,779 + +0.5
81,779 + -0.9
81,779 + -0.4
81,780 - -1.5
81,780 - -0.3
81,780 - +2.2
81,780 - +0.5
81,780 - -0.8
81,840 + -0.1
81,840 + -0.7
81,840 + +1.1
81,840 + -0.1
81,841 - -2.8
82,335 + Ac3H11_3722 0.59 +2.3
82,428 + Ac3H11_3722 0.70 -0.2
82,570 - Ac3H11_3722 0.87 +0.7
82,630 + +0.6
82,630 + -1.3
82,630 + -2.1
82,630 + +1.0
82,631 - -0.1
82,631 - -2.1
82,631 - +0.2
82,645 - -0.1
82,695 + -0.9
82,971 + +0.5
82,972 - -0.1
83,079 + Ac3H11_3723 0.12 +0.5
83,079 + Ac3H11_3723 0.12 -0.7
83,079 + Ac3H11_3723 0.12 -0.2
83,079 + Ac3H11_3723 0.12 -0.9
83,079 + Ac3H11_3723 0.12 -1.4
83,080 - Ac3H11_3723 0.12 +1.3
83,080 - Ac3H11_3723 0.12 +1.1
83,080 - Ac3H11_3723 0.12 +1.3
83,080 - Ac3H11_3723 0.12 +0.0
83,119 - Ac3H11_3723 0.14 -1.7
83,119 - Ac3H11_3723 0.14 -0.9
83,304 + Ac3H11_3723 0.28 +0.2
83,304 + Ac3H11_3723 0.28 +0.8
83,304 + Ac3H11_3723 0.28 -3.3
83,305 - Ac3H11_3723 0.28 -0.4
83,305 - Ac3H11_3723 0.28 +0.0
83,305 - Ac3H11_3723 0.28 -0.5
83,305 - Ac3H11_3723 0.28 +0.4
83,305 - Ac3H11_3723 0.28 +0.8
83,305 - Ac3H11_3723 0.28 +1.2
83,359 - Ac3H11_3723 0.32 -1.0
83,359 - Ac3H11_3723 0.32 -0.2
83,410 - Ac3H11_3723 0.35 -0.7
83,529 + Ac3H11_3723 0.44 +1.1
83,529 + Ac3H11_3723 0.44 -0.8
83,530 - Ac3H11_3723 0.44 +0.9

Or see this region's nucleotide sequence