Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3197

Experiment: Bacitracin 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3196 and Ac3H11_3197 are separated by 128 nucleotides Ac3H11_3196 - FIG001454: Transglutaminase-like enzymes, putative cysteine proteases, at 98,429 to 100,477 _3196 Ac3H11_3197 - Membrane-bound lytic murein transglycosylase B precursor (EC 3.2.1.-), at 100,606 to 101,565 _3197 Position (kb) 100 101 102Strain fitness (log2 ratio) -3 -2 -1 0 1at 99.656 kb on + strand, within Ac3H11_3196at 99.657 kb on - strand, within Ac3H11_3196at 99.657 kb on - strand, within Ac3H11_3196at 99.657 kb on - strand, within Ac3H11_3196at 100.079 kb on + strand, within Ac3H11_3196at 100.527 kb on - strandat 100.529 kb on + strandat 100.533 kb on - strandat 100.547 kb on + strandat 100.590 kb on + strandat 100.612 kb on + strandat 100.613 kb on - strandat 100.778 kb on - strand, within Ac3H11_3197at 100.921 kb on + strand, within Ac3H11_3197at 100.922 kb on - strand, within Ac3H11_3197at 100.922 kb on - strand, within Ac3H11_3197at 101.098 kb on + strand, within Ac3H11_3197at 101.150 kb on - strand, within Ac3H11_3197at 101.150 kb on - strand, within Ac3H11_3197at 101.227 kb on + strand, within Ac3H11_3197at 101.228 kb on - strand, within Ac3H11_3197at 101.228 kb on - strand, within Ac3H11_3197at 101.228 kb on - strand, within Ac3H11_3197at 101.228 kb on - strand, within Ac3H11_3197at 101.228 kb on - strand, within Ac3H11_3197at 101.450 kb on - strand, within Ac3H11_3197at 101.504 kb on - strandat 101.504 kb on - strandat 101.504 kb on - strandat 101.617 kb on + strandat 101.617 kb on + strandat 101.648 kb on - strandat 101.648 kb on - strandat 101.668 kb on + strandat 101.668 kb on + strandat 101.668 kb on + strandat 101.669 kb on - strandat 101.834 kb on - strandat 102.551 kb on - strandat 102.551 kb on - strandat 102.551 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.032 mg/ml
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99,656 + Ac3H11_3196 0.60 -1.4
99,657 - Ac3H11_3196 0.60 -3.1
99,657 - Ac3H11_3196 0.60 +0.2
99,657 - Ac3H11_3196 0.60 -1.0
100,079 + Ac3H11_3196 0.81 -0.4
100,527 - -0.7
100,529 + +0.6
100,533 - +0.5
100,547 + -1.5
100,590 + +0.4
100,612 + -2.1
100,613 - -0.4
100,778 - Ac3H11_3197 0.18 -0.0
100,921 + Ac3H11_3197 0.33 -3.0
100,922 - Ac3H11_3197 0.33 -0.2
100,922 - Ac3H11_3197 0.33 -2.6
101,098 + Ac3H11_3197 0.51 -1.7
101,150 - Ac3H11_3197 0.57 -0.7
101,150 - Ac3H11_3197 0.57 -0.2
101,227 + Ac3H11_3197 0.65 -1.8
101,228 - Ac3H11_3197 0.65 -2.2
101,228 - Ac3H11_3197 0.65 -1.1
101,228 - Ac3H11_3197 0.65 +0.6
101,228 - Ac3H11_3197 0.65 +1.2
101,228 - Ac3H11_3197 0.65 +0.6
101,450 - Ac3H11_3197 0.88 +0.5
101,504 - -1.0
101,504 - -0.6
101,504 - -0.5
101,617 + -0.4
101,617 + +0.7
101,648 - -1.3
101,648 - +0.1
101,668 + -0.8
101,668 + +0.7
101,668 + -0.8
101,669 - -2.0
101,834 - -1.4
102,551 - -2.6
102,551 - +1.2
102,551 - +1.3

Or see this region's nucleotide sequence