Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3023

Experiment: Bacitracin 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3022 and Ac3H11_3023 are separated by 192 nucleotidesAc3H11_3023 and Ac3H11_3024 are separated by 304 nucleotides Ac3H11_3022 - putative sugar transport protein, at 43,439 to 45,070 _3022 Ac3H11_3023 - FIG00347684: hypothetical protein, at 45,263 to 45,466 _3023 Ac3H11_3024 - Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein, at 45,771 to 46,889 _3024 Position (kb) 45 46Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 44.290 kb on + strand, within Ac3H11_3022at 44.381 kb on + strand, within Ac3H11_3022at 44.381 kb on + strand, within Ac3H11_3022at 44.381 kb on + strand, within Ac3H11_3022at 44.382 kb on - strand, within Ac3H11_3022at 44.382 kb on - strand, within Ac3H11_3022at 44.382 kb on - strand, within Ac3H11_3022at 44.382 kb on - strand, within Ac3H11_3022at 44.404 kb on + strand, within Ac3H11_3022at 44.404 kb on + strand, within Ac3H11_3022at 44.404 kb on + strand, within Ac3H11_3022at 44.404 kb on + strand, within Ac3H11_3022at 44.404 kb on + strand, within Ac3H11_3022at 44.404 kb on + strand, within Ac3H11_3022at 44.404 kb on + strand, within Ac3H11_3022at 44.404 kb on + strand, within Ac3H11_3022at 44.404 kb on + strand, within Ac3H11_3022at 44.405 kb on - strand, within Ac3H11_3022at 44.405 kb on - strand, within Ac3H11_3022at 44.405 kb on - strand, within Ac3H11_3022at 44.405 kb on - strand, within Ac3H11_3022at 44.570 kb on + strand, within Ac3H11_3022at 44.570 kb on + strand, within Ac3H11_3022at 44.570 kb on + strand, within Ac3H11_3022at 44.570 kb on + strand, within Ac3H11_3022at 44.570 kb on + strand, within Ac3H11_3022at 44.570 kb on + strand, within Ac3H11_3022at 44.570 kb on + strand, within Ac3H11_3022at 44.570 kb on + strand, within Ac3H11_3022at 44.571 kb on - strand, within Ac3H11_3022at 44.571 kb on - strand, within Ac3H11_3022at 44.571 kb on - strand, within Ac3H11_3022at 44.571 kb on - strand, within Ac3H11_3022at 44.640 kb on - strand, within Ac3H11_3022at 44.789 kb on + strand, within Ac3H11_3022at 44.816 kb on + strand, within Ac3H11_3022at 44.816 kb on + strand, within Ac3H11_3022at 44.816 kb on + strand, within Ac3H11_3022at 44.817 kb on - strand, within Ac3H11_3022at 44.867 kb on + strand, within Ac3H11_3022at 44.867 kb on + strand, within Ac3H11_3022at 44.889 kb on - strand, within Ac3H11_3022at 44.966 kb on + strandat 44.966 kb on + strandat 44.966 kb on + strandat 44.966 kb on + strandat 44.966 kb on + strandat 44.966 kb on + strandat 44.966 kb on + strandat 44.966 kb on + strandat 44.967 kb on - strandat 44.967 kb on - strandat 44.967 kb on - strandat 44.967 kb on - strandat 44.967 kb on - strandat 44.967 kb on - strandat 44.967 kb on - strandat 44.967 kb on - strandat 44.967 kb on - strandat 44.967 kb on - strandat 44.967 kb on - strandat 44.967 kb on - strandat 44.967 kb on - strandat 44.982 kb on - strandat 45.056 kb on + strandat 45.056 kb on + strandat 45.056 kb on + strandat 45.056 kb on + strandat 45.056 kb on + strandat 45.056 kb on + strandat 45.056 kb on + strandat 45.056 kb on + strandat 45.056 kb on + strandat 45.057 kb on - strandat 45.057 kb on - strandat 45.057 kb on - strandat 45.057 kb on - strandat 45.187 kb on + strandat 45.187 kb on + strandat 45.187 kb on + strandat 45.188 kb on - strandat 45.188 kb on - strandat 45.188 kb on - strandat 45.243 kb on - strandat 45.243 kb on - strandat 45.311 kb on + strand, within Ac3H11_3023at 45.311 kb on + strand, within Ac3H11_3023at 45.311 kb on + strand, within Ac3H11_3023at 45.311 kb on + strand, within Ac3H11_3023at 45.311 kb on + strand, within Ac3H11_3023at 45.311 kb on + strand, within Ac3H11_3023at 45.311 kb on + strand, within Ac3H11_3023at 45.312 kb on - strand, within Ac3H11_3023at 45.312 kb on - strand, within Ac3H11_3023at 45.312 kb on - strand, within Ac3H11_3023at 45.312 kb on - strand, within Ac3H11_3023at 45.312 kb on - strand, within Ac3H11_3023at 45.312 kb on - strand, within Ac3H11_3023at 45.312 kb on - strand, within Ac3H11_3023at 45.312 kb on - strand, within Ac3H11_3023at 45.312 kb on - strand, within Ac3H11_3023at 45.464 kb on + strandat 45.610 kb on + strandat 45.611 kb on - strandat 45.611 kb on - strandat 45.611 kb on - strandat 45.714 kb on + strandat 45.772 kb on + strandat 45.772 kb on + strandat 45.772 kb on + strandat 45.772 kb on + strandat 45.847 kb on + strandat 45.847 kb on + strandat 45.847 kb on + strandat 45.848 kb on - strandat 45.848 kb on - strandat 45.848 kb on - strandat 45.848 kb on - strandat 45.848 kb on - strandat 46.048 kb on + strand, within Ac3H11_3024at 46.048 kb on + strand, within Ac3H11_3024at 46.268 kb on + strand, within Ac3H11_3024at 46.276 kb on + strand, within Ac3H11_3024at 46.276 kb on + strand, within Ac3H11_3024at 46.277 kb on - strand, within Ac3H11_3024

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.032 mg/ml
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44,290 + Ac3H11_3022 0.52 +0.7
44,381 + Ac3H11_3022 0.58 -0.3
44,381 + Ac3H11_3022 0.58 +0.9
44,381 + Ac3H11_3022 0.58 +1.6
44,382 - Ac3H11_3022 0.58 +0.3
44,382 - Ac3H11_3022 0.58 -3.2
44,382 - Ac3H11_3022 0.58 +0.2
44,382 - Ac3H11_3022 0.58 -0.9
44,404 + Ac3H11_3022 0.59 +0.5
44,404 + Ac3H11_3022 0.59 +1.5
44,404 + Ac3H11_3022 0.59 -0.1
44,404 + Ac3H11_3022 0.59 +1.6
44,404 + Ac3H11_3022 0.59 +0.0
44,404 + Ac3H11_3022 0.59 -1.0
44,404 + Ac3H11_3022 0.59 -2.0
44,404 + Ac3H11_3022 0.59 +0.2
44,404 + Ac3H11_3022 0.59 -0.1
44,405 - Ac3H11_3022 0.59 +0.3
44,405 - Ac3H11_3022 0.59 -1.9
44,405 - Ac3H11_3022 0.59 +0.7
44,405 - Ac3H11_3022 0.59 -0.6
44,570 + Ac3H11_3022 0.69 -0.1
44,570 + Ac3H11_3022 0.69 -0.8
44,570 + Ac3H11_3022 0.69 +0.9
44,570 + Ac3H11_3022 0.69 -0.2
44,570 + Ac3H11_3022 0.69 -0.3
44,570 + Ac3H11_3022 0.69 -2.9
44,570 + Ac3H11_3022 0.69 -2.5
44,570 + Ac3H11_3022 0.69 -0.0
44,571 - Ac3H11_3022 0.69 +0.5
44,571 - Ac3H11_3022 0.69 -0.7
44,571 - Ac3H11_3022 0.69 +0.2
44,571 - Ac3H11_3022 0.69 -0.9
44,640 - Ac3H11_3022 0.74 +0.9
44,789 + Ac3H11_3022 0.83 +0.7
44,816 + Ac3H11_3022 0.84 -0.7
44,816 + Ac3H11_3022 0.84 +0.9
44,816 + Ac3H11_3022 0.84 +0.3
44,817 - Ac3H11_3022 0.84 -1.4
44,867 + Ac3H11_3022 0.88 +0.4
44,867 + Ac3H11_3022 0.88 +0.4
44,889 - Ac3H11_3022 0.89 -0.4
44,966 + +0.1
44,966 + -0.7
44,966 + -1.3
44,966 + +0.3
44,966 + +0.5
44,966 + +0.9
44,966 + -1.0
44,966 + -0.8
44,967 - +1.4
44,967 - -0.5
44,967 - -0.5
44,967 - +0.4
44,967 - +0.1
44,967 - +0.5
44,967 - -0.7
44,967 - +0.3
44,967 - +0.4
44,967 - +0.9
44,967 - +0.3
44,967 - -0.4
44,967 - -1.9
44,982 - -0.1
45,056 + +0.4
45,056 + -1.5
45,056 + -0.4
45,056 + +1.0
45,056 + +0.5
45,056 + -0.1
45,056 + +0.2
45,056 + -3.4
45,056 + +0.3
45,057 - +0.4
45,057 - +0.5
45,057 - -0.7
45,057 - -0.2
45,187 + +0.1
45,187 + -0.0
45,187 + -1.2
45,188 - -0.3
45,188 - +0.9
45,188 - +0.6
45,243 - -1.0
45,243 - -0.1
45,311 + Ac3H11_3023 0.24 -3.8
45,311 + Ac3H11_3023 0.24 +0.5
45,311 + Ac3H11_3023 0.24 -0.7
45,311 + Ac3H11_3023 0.24 -1.6
45,311 + Ac3H11_3023 0.24 +1.0
45,311 + Ac3H11_3023 0.24 +0.2
45,311 + Ac3H11_3023 0.24 -1.0
45,312 - Ac3H11_3023 0.24 +0.1
45,312 - Ac3H11_3023 0.24 -2.3
45,312 - Ac3H11_3023 0.24 +0.8
45,312 - Ac3H11_3023 0.24 +0.2
45,312 - Ac3H11_3023 0.24 +0.2
45,312 - Ac3H11_3023 0.24 +1.1
45,312 - Ac3H11_3023 0.24 -0.5
45,312 - Ac3H11_3023 0.24 +1.4
45,312 - Ac3H11_3023 0.24 +0.7
45,464 + +0.1
45,610 + +0.8
45,611 - -0.8
45,611 - +0.8
45,611 - -0.4
45,714 + +0.5
45,772 + +0.7
45,772 + +0.3
45,772 + +2.7
45,772 + +1.3
45,847 + +0.1
45,847 + -0.2
45,847 + -0.6
45,848 - +0.8
45,848 - +0.7
45,848 - -0.1
45,848 - -0.1
45,848 - +0.2
46,048 + Ac3H11_3024 0.25 -0.5
46,048 + Ac3H11_3024 0.25 +1.2
46,268 + Ac3H11_3024 0.44 +1.2
46,276 + Ac3H11_3024 0.45 -0.1
46,276 + Ac3H11_3024 0.45 +1.6
46,277 - Ac3H11_3024 0.45 -0.6

Or see this region's nucleotide sequence