Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_2763

Experiment: Bacitracin 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_2761 and Ac3H11_2762 are separated by 8 nucleotidesAc3H11_2762 and Ac3H11_2763 are separated by 12 nucleotidesAc3H11_2763 and Ac3H11_2764 overlap by 24 nucleotidesAc3H11_2764 and Ac3H11_2765 overlap by 14 nucleotides Ac3H11_2761 - O-succinylbenzoic acid--CoA ligase (EC 6.2.1.26), at 1,061,140 to 1,062,777 _2761 Ac3H11_2762 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 1,062,786 to 1,063,553 _2762 Ac3H11_2763 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 1,063,566 to 1,065,131 _2763 Ac3H11_2764 - hypothetical protein, at 1,065,108 to 1,065,335 _2764 Ac3H11_2765 - Fumarylacetoacetate hydrolase family protein, at 1,065,322 to 1,066,308 _2765 Position (kb) 1063 1064 1065 1066Strain fitness (log2 ratio) -2 -1 0 1 2at 1062.988 kb on + strand, within Ac3H11_2762at 1062.988 kb on + strand, within Ac3H11_2762at 1062.989 kb on - strand, within Ac3H11_2762at 1062.989 kb on - strand, within Ac3H11_2762at 1062.989 kb on - strand, within Ac3H11_2762at 1062.989 kb on - strand, within Ac3H11_2762at 1062.989 kb on - strand, within Ac3H11_2762at 1063.036 kb on + strand, within Ac3H11_2762at 1063.036 kb on + strand, within Ac3H11_2762at 1063.036 kb on + strand, within Ac3H11_2762at 1063.037 kb on - strand, within Ac3H11_2762at 1063.037 kb on - strand, within Ac3H11_2762at 1063.099 kb on + strand, within Ac3H11_2762at 1063.149 kb on + strand, within Ac3H11_2762at 1063.149 kb on + strand, within Ac3H11_2762at 1063.150 kb on - strand, within Ac3H11_2762at 1063.568 kb on - strandat 1063.568 kb on - strandat 1063.639 kb on + strandat 1063.693 kb on + strandat 1063.693 kb on + strandat 1063.694 kb on - strandat 1063.708 kb on + strandat 1063.708 kb on + strandat 1063.711 kb on + strandat 1063.913 kb on - strand, within Ac3H11_2763at 1063.913 kb on - strand, within Ac3H11_2763at 1063.913 kb on - strand, within Ac3H11_2763at 1063.913 kb on - strand, within Ac3H11_2763at 1063.936 kb on + strand, within Ac3H11_2763at 1063.937 kb on - strand, within Ac3H11_2763at 1063.937 kb on - strand, within Ac3H11_2763at 1064.030 kb on - strand, within Ac3H11_2763at 1064.615 kb on + strand, within Ac3H11_2763at 1064.616 kb on - strand, within Ac3H11_2763at 1064.616 kb on - strand, within Ac3H11_2763at 1064.616 kb on - strand, within Ac3H11_2763at 1064.641 kb on + strand, within Ac3H11_2763at 1064.641 kb on + strand, within Ac3H11_2763at 1064.642 kb on - strand, within Ac3H11_2763at 1064.642 kb on - strand, within Ac3H11_2763at 1064.642 kb on - strand, within Ac3H11_2763at 1064.783 kb on + strand, within Ac3H11_2763at 1064.827 kb on + strand, within Ac3H11_2763at 1064.827 kb on + strand, within Ac3H11_2763at 1065.371 kb on - strandat 1065.399 kb on - strandat 1065.512 kb on + strand, within Ac3H11_2765at 1065.512 kb on + strand, within Ac3H11_2765at 1065.512 kb on + strand, within Ac3H11_2765at 1065.512 kb on + strand, within Ac3H11_2765at 1065.512 kb on + strand, within Ac3H11_2765at 1065.512 kb on + strand, within Ac3H11_2765at 1065.512 kb on + strand, within Ac3H11_2765at 1065.512 kb on + strand, within Ac3H11_2765at 1065.513 kb on - strand, within Ac3H11_2765at 1065.513 kb on - strand, within Ac3H11_2765at 1065.513 kb on - strand, within Ac3H11_2765at 1065.513 kb on - strand, within Ac3H11_2765at 1065.513 kb on - strand, within Ac3H11_2765at 1065.513 kb on - strand, within Ac3H11_2765at 1065.513 kb on - strand, within Ac3H11_2765at 1065.513 kb on - strand, within Ac3H11_2765at 1065.578 kb on + strandat 1065.579 kb on - strand, within Ac3H11_2765at 1065.579 kb on - strand, within Ac3H11_2765at 1065.734 kb on + strand, within Ac3H11_2765at 1065.735 kb on - strand, within Ac3H11_2765at 1065.779 kb on - strand, within Ac3H11_2765at 1065.782 kb on + strand, within Ac3H11_2765at 1065.782 kb on + strand, within Ac3H11_2765at 1065.782 kb on + strand, within Ac3H11_2765at 1065.783 kb on - strand, within Ac3H11_2765at 1065.783 kb on - strand, within Ac3H11_2765at 1065.783 kb on - strand, within Ac3H11_2765at 1065.783 kb on - strand, within Ac3H11_2765at 1065.878 kb on + strand, within Ac3H11_2765at 1065.879 kb on - strand, within Ac3H11_2765at 1065.881 kb on + strand, within Ac3H11_2765at 1065.882 kb on - strand, within Ac3H11_2765

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.032 mg/ml
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1,062,988 + Ac3H11_2762 0.26 +0.8
1,062,988 + Ac3H11_2762 0.26 -1.1
1,062,989 - Ac3H11_2762 0.26 +0.5
1,062,989 - Ac3H11_2762 0.26 -0.7
1,062,989 - Ac3H11_2762 0.26 +0.8
1,062,989 - Ac3H11_2762 0.26 -0.8
1,062,989 - Ac3H11_2762 0.26 +2.1
1,063,036 + Ac3H11_2762 0.33 -1.7
1,063,036 + Ac3H11_2762 0.33 -0.1
1,063,036 + Ac3H11_2762 0.33 -0.3
1,063,037 - Ac3H11_2762 0.33 +0.1
1,063,037 - Ac3H11_2762 0.33 -0.2
1,063,099 + Ac3H11_2762 0.41 -0.2
1,063,149 + Ac3H11_2762 0.47 -2.3
1,063,149 + Ac3H11_2762 0.47 +0.2
1,063,150 - Ac3H11_2762 0.47 +0.1
1,063,568 - +0.2
1,063,568 - -1.1
1,063,639 + +1.1
1,063,693 + +1.4
1,063,693 + +0.2
1,063,694 - -1.3
1,063,708 + +0.2
1,063,708 + -1.2
1,063,711 + -0.2
1,063,913 - Ac3H11_2763 0.22 -1.3
1,063,913 - Ac3H11_2763 0.22 -2.6
1,063,913 - Ac3H11_2763 0.22 +0.6
1,063,913 - Ac3H11_2763 0.22 -0.6
1,063,936 + Ac3H11_2763 0.24 -2.3
1,063,937 - Ac3H11_2763 0.24 -0.6
1,063,937 - Ac3H11_2763 0.24 -1.7
1,064,030 - Ac3H11_2763 0.30 -0.5
1,064,615 + Ac3H11_2763 0.67 -0.2
1,064,616 - Ac3H11_2763 0.67 -2.4
1,064,616 - Ac3H11_2763 0.67 +0.9
1,064,616 - Ac3H11_2763 0.67 -0.6
1,064,641 + Ac3H11_2763 0.69 -1.8
1,064,641 + Ac3H11_2763 0.69 +0.5
1,064,642 - Ac3H11_2763 0.69 +0.2
1,064,642 - Ac3H11_2763 0.69 +0.2
1,064,642 - Ac3H11_2763 0.69 -0.9
1,064,783 + Ac3H11_2763 0.78 -1.0
1,064,827 + Ac3H11_2763 0.81 +0.3
1,064,827 + Ac3H11_2763 0.81 +0.6
1,065,371 - -0.5
1,065,399 - +0.5
1,065,512 + Ac3H11_2765 0.19 -0.2
1,065,512 + Ac3H11_2765 0.19 -0.2
1,065,512 + Ac3H11_2765 0.19 -0.5
1,065,512 + Ac3H11_2765 0.19 +0.6
1,065,512 + Ac3H11_2765 0.19 +2.7
1,065,512 + Ac3H11_2765 0.19 +0.8
1,065,512 + Ac3H11_2765 0.19 +1.8
1,065,512 + Ac3H11_2765 0.19 +1.9
1,065,513 - Ac3H11_2765 0.19 +0.3
1,065,513 - Ac3H11_2765 0.19 +1.1
1,065,513 - Ac3H11_2765 0.19 -1.8
1,065,513 - Ac3H11_2765 0.19 +0.7
1,065,513 - Ac3H11_2765 0.19 +0.0
1,065,513 - Ac3H11_2765 0.19 +0.5
1,065,513 - Ac3H11_2765 0.19 -0.8
1,065,513 - Ac3H11_2765 0.19 +0.6
1,065,578 + +1.6
1,065,579 - Ac3H11_2765 0.26 -1.0
1,065,579 - Ac3H11_2765 0.26 +1.4
1,065,734 + Ac3H11_2765 0.42 -1.7
1,065,735 - Ac3H11_2765 0.42 +0.6
1,065,779 - Ac3H11_2765 0.46 +0.6
1,065,782 + Ac3H11_2765 0.47 -1.3
1,065,782 + Ac3H11_2765 0.47 -0.8
1,065,782 + Ac3H11_2765 0.47 -2.1
1,065,783 - Ac3H11_2765 0.47 +1.9
1,065,783 - Ac3H11_2765 0.47 +1.3
1,065,783 - Ac3H11_2765 0.47 -0.4
1,065,783 - Ac3H11_2765 0.47 -1.1
1,065,878 + Ac3H11_2765 0.56 -0.5
1,065,879 - Ac3H11_2765 0.56 +0.4
1,065,881 + Ac3H11_2765 0.57 -1.4
1,065,882 - Ac3H11_2765 0.57 -0.6

Or see this region's nucleotide sequence