Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_2747

Experiment: Bacitracin 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_2744 and Ac3H11_2745 are separated by 35 nucleotidesAc3H11_2745 and Ac3H11_2746 are separated by 95 nucleotidesAc3H11_2746 and Ac3H11_2747 overlap by 45 nucleotidesAc3H11_2747 and Ac3H11_2748 are separated by 17 nucleotides Ac3H11_2744 - Hemerythrin HHE cation binding protein, at 1,043,471 to 1,044,490 _2744 Ac3H11_2745 - Transcriptional regulator, TetR family, at 1,044,526 to 1,045,200 _2745 Ac3H11_2746 - hypothetical protein, at 1,045,296 to 1,045,493 _2746 Ac3H11_2747 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 1,045,449 to 1,047,080 _2747 Ac3H11_2748 - Putative short-chain dehydrogenase/reductase (EC 1.1.1.100), at 1,047,098 to 1,047,898 _2748 Position (kb) 1045 1046 1047 1048Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1044.830 kb on + strand, within Ac3H11_2745at 1044.842 kb on + strand, within Ac3H11_2745at 1044.882 kb on - strand, within Ac3H11_2745at 1044.977 kb on + strand, within Ac3H11_2745at 1044.977 kb on + strand, within Ac3H11_2745at 1044.978 kb on - strand, within Ac3H11_2745at 1045.022 kb on - strand, within Ac3H11_2745at 1045.497 kb on - strandat 1045.497 kb on - strandat 1045.497 kb on - strandat 1045.497 kb on - strandat 1045.574 kb on + strandat 1045.574 kb on + strandat 1045.574 kb on + strandat 1045.574 kb on + strandat 1045.575 kb on - strandat 1045.575 kb on - strandat 1045.575 kb on - strandat 1045.575 kb on - strandat 1045.578 kb on + strandat 1045.578 kb on + strandat 1045.578 kb on + strandat 1045.579 kb on - strandat 1045.579 kb on - strandat 1045.709 kb on + strand, within Ac3H11_2747at 1045.710 kb on - strand, within Ac3H11_2747at 1045.710 kb on - strand, within Ac3H11_2747at 1045.710 kb on - strand, within Ac3H11_2747at 1045.730 kb on - strand, within Ac3H11_2747at 1045.730 kb on - strand, within Ac3H11_2747at 1045.730 kb on - strand, within Ac3H11_2747at 1045.815 kb on + strand, within Ac3H11_2747at 1045.998 kb on + strand, within Ac3H11_2747at 1045.999 kb on - strand, within Ac3H11_2747at 1045.999 kb on - strand, within Ac3H11_2747at 1045.999 kb on - strand, within Ac3H11_2747at 1045.999 kb on - strand, within Ac3H11_2747at 1045.999 kb on - strand, within Ac3H11_2747at 1045.999 kb on - strand, within Ac3H11_2747at 1046.043 kb on + strand, within Ac3H11_2747at 1046.043 kb on + strand, within Ac3H11_2747at 1046.044 kb on - strand, within Ac3H11_2747at 1046.044 kb on - strand, within Ac3H11_2747at 1046.049 kb on + strand, within Ac3H11_2747at 1046.049 kb on + strand, within Ac3H11_2747at 1046.049 kb on + strand, within Ac3H11_2747at 1046.049 kb on + strand, within Ac3H11_2747at 1046.049 kb on + strand, within Ac3H11_2747at 1046.049 kb on + strand, within Ac3H11_2747at 1046.049 kb on + strand, within Ac3H11_2747at 1046.049 kb on + strand, within Ac3H11_2747at 1046.049 kb on + strand, within Ac3H11_2747at 1046.049 kb on + strand, within Ac3H11_2747at 1046.049 kb on + strand, within Ac3H11_2747at 1046.050 kb on - strand, within Ac3H11_2747at 1046.050 kb on - strand, within Ac3H11_2747at 1046.050 kb on - strand, within Ac3H11_2747at 1046.050 kb on - strand, within Ac3H11_2747at 1046.050 kb on - strand, within Ac3H11_2747at 1046.050 kb on - strand, within Ac3H11_2747at 1046.050 kb on - strand, within Ac3H11_2747at 1046.050 kb on - strand, within Ac3H11_2747at 1046.050 kb on - strand, within Ac3H11_2747at 1046.050 kb on - strand, within Ac3H11_2747at 1046.050 kb on - strand, within Ac3H11_2747at 1046.050 kb on - strand, within Ac3H11_2747at 1046.050 kb on - strand, within Ac3H11_2747at 1046.339 kb on + strand, within Ac3H11_2747at 1046.339 kb on + strand, within Ac3H11_2747at 1046.340 kb on - strand, within Ac3H11_2747at 1046.340 kb on - strand, within Ac3H11_2747at 1046.340 kb on - strand, within Ac3H11_2747at 1046.425 kb on - strand, within Ac3H11_2747at 1046.613 kb on + strand, within Ac3H11_2747at 1046.613 kb on + strand, within Ac3H11_2747at 1046.706 kb on + strand, within Ac3H11_2747at 1046.707 kb on - strand, within Ac3H11_2747at 1046.730 kb on + strand, within Ac3H11_2747at 1046.730 kb on + strand, within Ac3H11_2747at 1046.730 kb on + strand, within Ac3H11_2747at 1046.731 kb on - strand, within Ac3H11_2747at 1046.731 kb on - strand, within Ac3H11_2747at 1046.731 kb on - strand, within Ac3H11_2747at 1046.934 kb on + strandat 1046.934 kb on + strandat 1046.934 kb on + strandat 1046.935 kb on - strandat 1046.935 kb on - strandat 1046.935 kb on - strandat 1046.935 kb on - strandat 1046.949 kb on + strandat 1046.950 kb on - strandat 1046.950 kb on - strandat 1046.950 kb on - strandat 1047.003 kb on + strandat 1047.004 kb on - strandat 1047.004 kb on - strandat 1047.061 kb on + strandat 1047.061 kb on + strandat 1047.061 kb on + strandat 1047.062 kb on - strandat 1047.062 kb on - strandat 1047.062 kb on - strandat 1047.062 kb on - strandat 1047.062 kb on - strandat 1047.102 kb on + strandat 1047.138 kb on + strandat 1047.138 kb on + strandat 1047.139 kb on - strandat 1047.139 kb on - strandat 1047.316 kb on + strand, within Ac3H11_2748at 1047.317 kb on - strand, within Ac3H11_2748at 1047.317 kb on - strand, within Ac3H11_2748at 1047.433 kb on - strand, within Ac3H11_2748at 1047.556 kb on + strand, within Ac3H11_2748at 1047.556 kb on + strand, within Ac3H11_2748at 1047.556 kb on + strand, within Ac3H11_2748at 1047.556 kb on + strand, within Ac3H11_2748at 1047.556 kb on + strand, within Ac3H11_2748at 1047.556 kb on + strand, within Ac3H11_2748at 1047.557 kb on - strand, within Ac3H11_2748at 1047.557 kb on - strand, within Ac3H11_2748at 1047.557 kb on - strand, within Ac3H11_2748at 1047.568 kb on + strand, within Ac3H11_2748at 1047.569 kb on - strand, within Ac3H11_2748at 1047.569 kb on - strand, within Ac3H11_2748at 1047.569 kb on - strand, within Ac3H11_2748at 1047.569 kb on - strand, within Ac3H11_2748at 1047.661 kb on + strand, within Ac3H11_2748at 1047.662 kb on - strand, within Ac3H11_2748at 1047.822 kb on + strandat 1047.822 kb on + strandat 1047.910 kb on - strandat 1047.910 kb on - strandat 1047.912 kb on - strandat 1048.016 kb on + strandat 1048.017 kb on - strandat 1048.017 kb on - strandat 1048.017 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.032 mg/ml
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1,044,830 + Ac3H11_2745 0.45 -2.2
1,044,842 + Ac3H11_2745 0.47 -1.6
1,044,882 - Ac3H11_2745 0.53 +1.6
1,044,977 + Ac3H11_2745 0.67 -1.6
1,044,977 + Ac3H11_2745 0.67 -0.7
1,044,978 - Ac3H11_2745 0.67 -0.4
1,045,022 - Ac3H11_2745 0.73 -1.4
1,045,497 - -1.2
1,045,497 - -0.3
1,045,497 - -0.4
1,045,497 - -0.8
1,045,574 + -0.5
1,045,574 + -0.8
1,045,574 + +0.8
1,045,574 + +1.1
1,045,575 - -1.1
1,045,575 - -2.0
1,045,575 - -1.3
1,045,575 - -1.1
1,045,578 + -1.7
1,045,578 + +1.5
1,045,578 + +1.0
1,045,579 - -2.4
1,045,579 - +0.1
1,045,709 + Ac3H11_2747 0.16 -0.2
1,045,710 - Ac3H11_2747 0.16 -0.8
1,045,710 - Ac3H11_2747 0.16 +0.5
1,045,710 - Ac3H11_2747 0.16 -0.8
1,045,730 - Ac3H11_2747 0.17 -0.5
1,045,730 - Ac3H11_2747 0.17 -0.4
1,045,730 - Ac3H11_2747 0.17 -3.5
1,045,815 + Ac3H11_2747 0.22 -0.9
1,045,998 + Ac3H11_2747 0.34 -0.3
1,045,999 - Ac3H11_2747 0.34 -1.3
1,045,999 - Ac3H11_2747 0.34 -1.9
1,045,999 - Ac3H11_2747 0.34 -0.3
1,045,999 - Ac3H11_2747 0.34 -0.4
1,045,999 - Ac3H11_2747 0.34 -0.8
1,045,999 - Ac3H11_2747 0.34 +0.3
1,046,043 + Ac3H11_2747 0.36 +0.2
1,046,043 + Ac3H11_2747 0.36 +0.6
1,046,044 - Ac3H11_2747 0.36 -1.1
1,046,044 - Ac3H11_2747 0.36 -0.8
1,046,049 + Ac3H11_2747 0.37 -0.6
1,046,049 + Ac3H11_2747 0.37 -0.9
1,046,049 + Ac3H11_2747 0.37 +0.4
1,046,049 + Ac3H11_2747 0.37 +0.0
1,046,049 + Ac3H11_2747 0.37 +0.2
1,046,049 + Ac3H11_2747 0.37 +0.3
1,046,049 + Ac3H11_2747 0.37 +0.1
1,046,049 + Ac3H11_2747 0.37 -2.4
1,046,049 + Ac3H11_2747 0.37 +0.1
1,046,049 + Ac3H11_2747 0.37 -2.3
1,046,049 + Ac3H11_2747 0.37 +0.3
1,046,050 - Ac3H11_2747 0.37 +0.1
1,046,050 - Ac3H11_2747 0.37 -1.4
1,046,050 - Ac3H11_2747 0.37 -0.1
1,046,050 - Ac3H11_2747 0.37 -2.6
1,046,050 - Ac3H11_2747 0.37 -0.9
1,046,050 - Ac3H11_2747 0.37 +1.5
1,046,050 - Ac3H11_2747 0.37 +1.0
1,046,050 - Ac3H11_2747 0.37 -1.0
1,046,050 - Ac3H11_2747 0.37 -0.1
1,046,050 - Ac3H11_2747 0.37 +0.2
1,046,050 - Ac3H11_2747 0.37 -2.5
1,046,050 - Ac3H11_2747 0.37 +0.7
1,046,050 - Ac3H11_2747 0.37 +0.8
1,046,339 + Ac3H11_2747 0.55 -0.4
1,046,339 + Ac3H11_2747 0.55 -3.0
1,046,340 - Ac3H11_2747 0.55 +0.3
1,046,340 - Ac3H11_2747 0.55 +0.2
1,046,340 - Ac3H11_2747 0.55 +0.7
1,046,425 - Ac3H11_2747 0.60 -0.8
1,046,613 + Ac3H11_2747 0.71 -0.5
1,046,613 + Ac3H11_2747 0.71 -0.9
1,046,706 + Ac3H11_2747 0.77 +0.8
1,046,707 - Ac3H11_2747 0.77 -0.1
1,046,730 + Ac3H11_2747 0.78 +0.2
1,046,730 + Ac3H11_2747 0.78 -0.2
1,046,730 + Ac3H11_2747 0.78 +0.7
1,046,731 - Ac3H11_2747 0.79 -2.8
1,046,731 - Ac3H11_2747 0.79 -0.4
1,046,731 - Ac3H11_2747 0.79 -3.0
1,046,934 + +0.4
1,046,934 + -1.2
1,046,934 + +1.6
1,046,935 - -1.2
1,046,935 - -3.0
1,046,935 - +0.0
1,046,935 - -2.1
1,046,949 + +0.4
1,046,950 - -2.9
1,046,950 - +1.0
1,046,950 - -1.2
1,047,003 + +0.8
1,047,004 - -2.8
1,047,004 - +2.0
1,047,061 + -2.2
1,047,061 + +0.3
1,047,061 + -0.6
1,047,062 - -0.8
1,047,062 - -1.6
1,047,062 - -0.4
1,047,062 - -2.2
1,047,062 - +0.4
1,047,102 + +0.6
1,047,138 + +0.2
1,047,138 + -0.4
1,047,139 - -0.3
1,047,139 - +2.0
1,047,316 + Ac3H11_2748 0.27 -0.1
1,047,317 - Ac3H11_2748 0.27 -2.0
1,047,317 - Ac3H11_2748 0.27 -0.8
1,047,433 - Ac3H11_2748 0.42 -0.4
1,047,556 + Ac3H11_2748 0.57 +0.7
1,047,556 + Ac3H11_2748 0.57 +0.1
1,047,556 + Ac3H11_2748 0.57 +0.0
1,047,556 + Ac3H11_2748 0.57 -1.1
1,047,556 + Ac3H11_2748 0.57 -0.2
1,047,556 + Ac3H11_2748 0.57 +0.6
1,047,557 - Ac3H11_2748 0.57 -0.0
1,047,557 - Ac3H11_2748 0.57 -1.0
1,047,557 - Ac3H11_2748 0.57 +0.7
1,047,568 + Ac3H11_2748 0.59 -1.2
1,047,569 - Ac3H11_2748 0.59 +0.0
1,047,569 - Ac3H11_2748 0.59 -1.8
1,047,569 - Ac3H11_2748 0.59 -2.0
1,047,569 - Ac3H11_2748 0.59 +0.2
1,047,661 + Ac3H11_2748 0.70 -0.1
1,047,662 - Ac3H11_2748 0.70 -1.2
1,047,822 + -1.3
1,047,822 + -0.3
1,047,910 - -1.0
1,047,910 - -2.9
1,047,912 - -3.4
1,048,016 + +1.3
1,048,017 - -2.6
1,048,017 - -3.3
1,048,017 - -1.4

Or see this region's nucleotide sequence