Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_2681

Experiment: Bacitracin 0.032 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_2680 and Ac3H11_2681 are separated by 53 nucleotidesAc3H11_2681 and Ac3H11_2682 are separated by 135 nucleotides Ac3H11_2680 - Type I secretion system, outer membrane component LapE, at 974,594 to 975,610 _2680 Ac3H11_2681 - UspA, at 975,664 to 976,110 _2681 Ac3H11_2682 - Polyhydroxyalkanoic acid synthase, at 976,246 to 977,997 _2682 Position (kb) 975 976 977Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 974.678 kb on + strandat 974.746 kb on + strand, within Ac3H11_2680at 974.755 kb on + strand, within Ac3H11_2680at 974.755 kb on + strandat 974.773 kb on + strand, within Ac3H11_2680at 974.773 kb on + strand, within Ac3H11_2680at 974.774 kb on - strand, within Ac3H11_2680at 974.816 kb on + strand, within Ac3H11_2680at 974.894 kb on + strand, within Ac3H11_2680at 974.906 kb on - strand, within Ac3H11_2680at 974.909 kb on + strand, within Ac3H11_2680at 974.910 kb on - strand, within Ac3H11_2680at 974.910 kb on - strand, within Ac3H11_2680at 974.910 kb on - strand, within Ac3H11_2680at 974.910 kb on - strand, within Ac3H11_2680at 974.910 kb on - strand, within Ac3H11_2680at 974.935 kb on - strand, within Ac3H11_2680at 974.961 kb on + strand, within Ac3H11_2680at 974.962 kb on - strand, within Ac3H11_2680at 975.212 kb on - strand, within Ac3H11_2680at 975.231 kb on + strand, within Ac3H11_2680at 975.232 kb on - strand, within Ac3H11_2680at 975.232 kb on - strand, within Ac3H11_2680at 975.232 kb on - strand, within Ac3H11_2680at 975.312 kb on + strand, within Ac3H11_2680at 975.312 kb on + strand, within Ac3H11_2680at 975.312 kb on + strand, within Ac3H11_2680at 975.312 kb on + strand, within Ac3H11_2680at 975.312 kb on + strand, within Ac3H11_2680at 975.312 kb on + strand, within Ac3H11_2680at 975.312 kb on + strand, within Ac3H11_2680at 975.312 kb on + strand, within Ac3H11_2680at 975.312 kb on + strand, within Ac3H11_2680at 975.313 kb on - strand, within Ac3H11_2680at 975.313 kb on - strand, within Ac3H11_2680at 975.313 kb on - strand, within Ac3H11_2680at 975.313 kb on - strand, within Ac3H11_2680at 975.313 kb on - strand, within Ac3H11_2680at 975.313 kb on - strand, within Ac3H11_2680at 975.313 kb on - strand, within Ac3H11_2680at 975.313 kb on - strand, within Ac3H11_2680at 975.313 kb on - strand, within Ac3H11_2680at 975.430 kb on - strand, within Ac3H11_2680at 975.477 kb on + strand, within Ac3H11_2680at 975.840 kb on + strand, within Ac3H11_2681at 975.840 kb on + strand, within Ac3H11_2681at 975.840 kb on + strand, within Ac3H11_2681at 975.841 kb on - strand, within Ac3H11_2681at 975.841 kb on - strand, within Ac3H11_2681at 975.886 kb on - strand, within Ac3H11_2681at 975.997 kb on - strand, within Ac3H11_2681at 975.998 kb on + strand, within Ac3H11_2681at 975.998 kb on + strand, within Ac3H11_2681at 975.998 kb on + strand, within Ac3H11_2681at 975.998 kb on + strand, within Ac3H11_2681at 975.998 kb on + strand, within Ac3H11_2681at 975.998 kb on + strand, within Ac3H11_2681at 975.998 kb on + strand, within Ac3H11_2681at 975.998 kb on + strand, within Ac3H11_2681at 975.998 kb on + strand, within Ac3H11_2681at 975.998 kb on + strand, within Ac3H11_2681at 975.998 kb on + strand, within Ac3H11_2681at 975.998 kb on - strand, within Ac3H11_2681at 975.999 kb on - strand, within Ac3H11_2681at 975.999 kb on - strand, within Ac3H11_2681at 975.999 kb on - strand, within Ac3H11_2681at 975.999 kb on - strand, within Ac3H11_2681at 975.999 kb on - strand, within Ac3H11_2681at 975.999 kb on - strand, within Ac3H11_2681at 975.999 kb on - strand, within Ac3H11_2681at 976.119 kb on + strandat 976.120 kb on - strandat 976.154 kb on + strandat 976.155 kb on - strandat 976.172 kb on + strandat 976.173 kb on - strandat 976.180 kb on + strandat 976.201 kb on + strandat 976.201 kb on + strandat 976.202 kb on - strandat 976.202 kb on - strandat 976.208 kb on + strandat 976.208 kb on + strandat 976.224 kb on - strandat 976.235 kb on + strandat 976.255 kb on + strandat 976.255 kb on + strandat 976.255 kb on + strandat 976.255 kb on + strandat 976.255 kb on + strandat 976.256 kb on - strandat 976.256 kb on - strandat 976.256 kb on - strandat 976.256 kb on - strandat 976.256 kb on - strandat 976.256 kb on - strandat 976.256 kb on - strandat 976.259 kb on + strandat 976.259 kb on + strandat 976.259 kb on + strandat 976.259 kb on + strandat 976.259 kb on + strandat 976.260 kb on - strandat 976.290 kb on - strandat 976.309 kb on + strandat 976.309 kb on + strandat 976.309 kb on + strandat 976.309 kb on + strandat 976.309 kb on + strandat 976.309 kb on + strandat 976.310 kb on - strandat 976.310 kb on - strandat 976.424 kb on + strand, within Ac3H11_2682at 976.424 kb on + strand, within Ac3H11_2682at 976.424 kb on + strand, within Ac3H11_2682at 976.424 kb on + strand, within Ac3H11_2682at 976.425 kb on - strand, within Ac3H11_2682at 976.425 kb on - strand, within Ac3H11_2682at 976.425 kb on - strand, within Ac3H11_2682at 976.425 kb on - strand, within Ac3H11_2682at 976.425 kb on - strand, within Ac3H11_2682at 976.425 kb on - strand, within Ac3H11_2682at 976.425 kb on - strand, within Ac3H11_2682at 976.425 kb on - strand, within Ac3H11_2682at 976.425 kb on - strand, within Ac3H11_2682at 976.425 kb on - strand, within Ac3H11_2682at 976.425 kb on - strand, within Ac3H11_2682at 976.457 kb on + strand, within Ac3H11_2682at 976.457 kb on + strand, within Ac3H11_2682at 976.457 kb on + strand, within Ac3H11_2682at 976.467 kb on + strand, within Ac3H11_2682at 976.559 kb on + strand, within Ac3H11_2682at 976.559 kb on + strand, within Ac3H11_2682at 976.559 kb on + strand, within Ac3H11_2682at 976.559 kb on + strand, within Ac3H11_2682at 976.581 kb on + strand, within Ac3H11_2682at 976.581 kb on + strand, within Ac3H11_2682at 976.582 kb on - strand, within Ac3H11_2682at 976.681 kb on - strand, within Ac3H11_2682at 976.688 kb on + strand, within Ac3H11_2682at 976.689 kb on - strand, within Ac3H11_2682at 976.703 kb on + strand, within Ac3H11_2682at 976.704 kb on - strand, within Ac3H11_2682at 976.786 kb on + strand, within Ac3H11_2682at 976.786 kb on + strand, within Ac3H11_2682at 976.786 kb on + strand, within Ac3H11_2682at 976.787 kb on - strand, within Ac3H11_2682at 976.787 kb on - strand, within Ac3H11_2682at 976.790 kb on + strand, within Ac3H11_2682at 976.790 kb on + strand, within Ac3H11_2682at 976.790 kb on + strand, within Ac3H11_2682at 976.790 kb on + strand, within Ac3H11_2682at 976.791 kb on - strand, within Ac3H11_2682at 976.791 kb on - strand, within Ac3H11_2682at 976.791 kb on - strand, within Ac3H11_2682at 976.813 kb on + strand, within Ac3H11_2682at 976.813 kb on + strand, within Ac3H11_2682at 976.813 kb on + strand, within Ac3H11_2682at 976.813 kb on + strand, within Ac3H11_2682at 976.814 kb on - strand, within Ac3H11_2682at 976.823 kb on + strand, within Ac3H11_2682at 976.823 kb on + strand, within Ac3H11_2682at 976.823 kb on + strand, within Ac3H11_2682at 976.824 kb on - strand, within Ac3H11_2682at 976.824 kb on - strand, within Ac3H11_2682at 976.824 kb on - strand, within Ac3H11_2682at 976.834 kb on + strand, within Ac3H11_2682at 976.834 kb on + strand, within Ac3H11_2682at 976.835 kb on - strand, within Ac3H11_2682at 976.835 kb on - strand, within Ac3H11_2682at 976.835 kb on - strand, within Ac3H11_2682at 976.996 kb on - strand, within Ac3H11_2682

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Per-strain Table

Position Strand Gene LocusTag Fraction Bacitracin 0.032 mg/ml
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974,678 + +0.2
974,746 + Ac3H11_2680 0.15 -0.8
974,755 + Ac3H11_2680 0.16 -0.7
974,755 + -0.7
974,773 + Ac3H11_2680 0.18 +0.2
974,773 + Ac3H11_2680 0.18 -0.2
974,774 - Ac3H11_2680 0.18 -2.0
974,816 + Ac3H11_2680 0.22 -2.4
974,894 + Ac3H11_2680 0.29 +0.0
974,906 - Ac3H11_2680 0.31 -0.3
974,909 + Ac3H11_2680 0.31 -0.2
974,910 - Ac3H11_2680 0.31 -0.2
974,910 - Ac3H11_2680 0.31 +0.3
974,910 - Ac3H11_2680 0.31 -1.1
974,910 - Ac3H11_2680 0.31 +0.5
974,910 - Ac3H11_2680 0.31 -0.1
974,935 - Ac3H11_2680 0.34 -0.5
974,961 + Ac3H11_2680 0.36 +1.6
974,962 - Ac3H11_2680 0.36 -1.4
975,212 - Ac3H11_2680 0.61 +0.8
975,231 + Ac3H11_2680 0.63 +0.7
975,232 - Ac3H11_2680 0.63 +0.2
975,232 - Ac3H11_2680 0.63 -1.6
975,232 - Ac3H11_2680 0.63 -1.6
975,312 + Ac3H11_2680 0.71 +1.1
975,312 + Ac3H11_2680 0.71 +0.7
975,312 + Ac3H11_2680 0.71 +0.4
975,312 + Ac3H11_2680 0.71 -2.3
975,312 + Ac3H11_2680 0.71 -0.8
975,312 + Ac3H11_2680 0.71 -1.0
975,312 + Ac3H11_2680 0.71 -0.1
975,312 + Ac3H11_2680 0.71 -0.3
975,312 + Ac3H11_2680 0.71 +0.5
975,313 - Ac3H11_2680 0.71 -0.8
975,313 - Ac3H11_2680 0.71 -0.5
975,313 - Ac3H11_2680 0.71 +0.4
975,313 - Ac3H11_2680 0.71 -0.4
975,313 - Ac3H11_2680 0.71 +0.1
975,313 - Ac3H11_2680 0.71 -1.4
975,313 - Ac3H11_2680 0.71 -0.5
975,313 - Ac3H11_2680 0.71 +0.2
975,313 - Ac3H11_2680 0.71 +0.1
975,430 - Ac3H11_2680 0.82 +0.9
975,477 + Ac3H11_2680 0.87 +0.6
975,840 + Ac3H11_2681 0.39 -0.8
975,840 + Ac3H11_2681 0.39 -1.3
975,840 + Ac3H11_2681 0.39 -1.4
975,841 - Ac3H11_2681 0.40 -1.3
975,841 - Ac3H11_2681 0.40 -1.5
975,886 - Ac3H11_2681 0.50 -0.4
975,997 - Ac3H11_2681 0.74 -1.4
975,998 + Ac3H11_2681 0.75 -0.1
975,998 + Ac3H11_2681 0.75 +0.5
975,998 + Ac3H11_2681 0.75 +0.5
975,998 + Ac3H11_2681 0.75 +1.7
975,998 + Ac3H11_2681 0.75 +1.8
975,998 + Ac3H11_2681 0.75 -0.4
975,998 + Ac3H11_2681 0.75 -0.7
975,998 + Ac3H11_2681 0.75 +2.0
975,998 + Ac3H11_2681 0.75 +0.4
975,998 + Ac3H11_2681 0.75 -0.4
975,998 + Ac3H11_2681 0.75 -0.5
975,998 - Ac3H11_2681 0.75 +0.5
975,999 - Ac3H11_2681 0.75 -1.7
975,999 - Ac3H11_2681 0.75 +0.2
975,999 - Ac3H11_2681 0.75 +1.4
975,999 - Ac3H11_2681 0.75 +0.3
975,999 - Ac3H11_2681 0.75 -0.2
975,999 - Ac3H11_2681 0.75 +0.5
975,999 - Ac3H11_2681 0.75 +1.0
976,119 + +1.3
976,120 - -1.0
976,154 + +1.0
976,155 - +0.3
976,172 + -0.2
976,173 - +0.3
976,180 + +1.1
976,201 + +0.9
976,201 + +0.7
976,202 - +0.6
976,202 - -2.4
976,208 + +0.3
976,208 + +0.6
976,224 - +1.4
976,235 + -1.2
976,255 + -0.2
976,255 + +0.1
976,255 + -0.6
976,255 + +0.4
976,255 + +0.4
976,256 - -0.5
976,256 - -0.3
976,256 - -0.5
976,256 - -0.7
976,256 - +0.8
976,256 - -0.2
976,256 - -0.3
976,259 + +0.7
976,259 + +0.1
976,259 + +0.1
976,259 + +1.4
976,259 + +0.0
976,260 - +0.3
976,290 - +1.0
976,309 + +0.4
976,309 + -0.0
976,309 + +0.0
976,309 + -0.6
976,309 + +1.6
976,309 + +0.0
976,310 - -1.5
976,310 - -1.4
976,424 + Ac3H11_2682 0.10 +0.1
976,424 + Ac3H11_2682 0.10 +0.8
976,424 + Ac3H11_2682 0.10 -3.7
976,424 + Ac3H11_2682 0.10 +1.3
976,425 - Ac3H11_2682 0.10 -1.4
976,425 - Ac3H11_2682 0.10 +0.5
976,425 - Ac3H11_2682 0.10 -1.3
976,425 - Ac3H11_2682 0.10 -0.7
976,425 - Ac3H11_2682 0.10 +0.4
976,425 - Ac3H11_2682 0.10 -0.1
976,425 - Ac3H11_2682 0.10 -0.3
976,425 - Ac3H11_2682 0.10 -2.8
976,425 - Ac3H11_2682 0.10 +0.7
976,425 - Ac3H11_2682 0.10 +0.9
976,425 - Ac3H11_2682 0.10 -2.1
976,457 + Ac3H11_2682 0.12 -2.0
976,457 + Ac3H11_2682 0.12 +0.5
976,457 + Ac3H11_2682 0.12 +1.4
976,467 + Ac3H11_2682 0.13 -1.4
976,559 + Ac3H11_2682 0.18 +0.4
976,559 + Ac3H11_2682 0.18 -1.1
976,559 + Ac3H11_2682 0.18 -0.0
976,559 + Ac3H11_2682 0.18 +0.4
976,581 + Ac3H11_2682 0.19 +0.3
976,581 + Ac3H11_2682 0.19 +0.1
976,582 - Ac3H11_2682 0.19 -3.2
976,681 - Ac3H11_2682 0.25 -0.3
976,688 + Ac3H11_2682 0.25 +1.7
976,689 - Ac3H11_2682 0.25 +0.1
976,703 + Ac3H11_2682 0.26 +0.8
976,704 - Ac3H11_2682 0.26 +0.3
976,786 + Ac3H11_2682 0.31 -0.5
976,786 + Ac3H11_2682 0.31 +1.2
976,786 + Ac3H11_2682 0.31 -1.0
976,787 - Ac3H11_2682 0.31 +0.2
976,787 - Ac3H11_2682 0.31 -0.5
976,790 + Ac3H11_2682 0.31 +0.2
976,790 + Ac3H11_2682 0.31 +0.6
976,790 + Ac3H11_2682 0.31 -1.4
976,790 + Ac3H11_2682 0.31 +0.2
976,791 - Ac3H11_2682 0.31 +0.6
976,791 - Ac3H11_2682 0.31 -0.6
976,791 - Ac3H11_2682 0.31 +1.3
976,813 + Ac3H11_2682 0.32 -0.1
976,813 + Ac3H11_2682 0.32 +0.3
976,813 + Ac3H11_2682 0.32 -1.2
976,813 + Ac3H11_2682 0.32 -0.8
976,814 - Ac3H11_2682 0.32 -0.3
976,823 + Ac3H11_2682 0.33 -0.0
976,823 + Ac3H11_2682 0.33 +0.4
976,823 + Ac3H11_2682 0.33 -0.5
976,824 - Ac3H11_2682 0.33 -0.6
976,824 - Ac3H11_2682 0.33 -0.8
976,824 - Ac3H11_2682 0.33 -0.5
976,834 + Ac3H11_2682 0.34 -1.1
976,834 + Ac3H11_2682 0.34 -1.7
976,835 - Ac3H11_2682 0.34 -0.6
976,835 - Ac3H11_2682 0.34 -3.5
976,835 - Ac3H11_2682 0.34 +1.5
976,996 - Ac3H11_2682 0.43 -0.5

Or see this region's nucleotide sequence