Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS33250 and AZOBR_RS33255 overlap by 4 nucleotides AZOBR_RS33255 and AZOBR_RS33260 are separated by 66 nucleotides AZOBR_RS33260 and AZOBR_RS33265 overlap by 4 nucleotides AZOBR_RS33265 and AZOBR_RS33270 are separated by 196 nucleotides AZOBR_RS33270 and AZOBR_RS33275 are separated by 277 nucleotides
AZOBR_RS33250: AZOBR_RS33250 - hypothetical protein, at 153,128 to 153,673
_RS33250
AZOBR_RS33255: AZOBR_RS33255 - hypothetical protein, at 153,670 to 153,954
_RS33255
AZOBR_RS33260: AZOBR_RS33260 - hypothetical protein, at 154,021 to 154,218
_RS33260
AZOBR_RS33265: AZOBR_RS33265 - hypothetical protein, at 154,215 to 154,763
_RS33265
AZOBR_RS33270: AZOBR_RS33270 - exported protein of unknown function, at 154,960 to 155,454
_RS33270
AZOBR_RS33275: AZOBR_RS33275 - hypothetical protein, at 155,732 to 156,067
_RS33275
Position (kb) 154
155 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 153.952 kb on + strand at 153.959 kb on + strand at 153.960 kb on - strand at 153.985 kb on + strand at 153.985 kb on + strand at 153.986 kb on - strand at 153.986 kb on - strand at 154.173 kb on - strand, within AZOBR_RS33260 at 154.173 kb on - strand, within AZOBR_RS33260 at 154.173 kb on - strand, within AZOBR_RS33260 at 154.174 kb on + strand, within AZOBR_RS33260 at 154.229 kb on + strand at 154.260 kb on + strand at 154.362 kb on + strand, within AZOBR_RS33265 at 154.362 kb on + strand, within AZOBR_RS33265 at 154.363 kb on - strand, within AZOBR_RS33265 at 154.363 kb on - strand, within AZOBR_RS33265 at 154.371 kb on + strand, within AZOBR_RS33265 at 154.372 kb on - strand, within AZOBR_RS33265 at 154.495 kb on - strand, within AZOBR_RS33265 at 154.744 kb on + strand at 154.928 kb on - strand at 154.928 kb on - strand at 154.950 kb on + strand at 154.950 kb on + strand at 154.950 kb on + strand at 154.951 kb on - strand at 154.951 kb on - strand at 154.951 kb on - strand at 154.951 kb on - strand at 154.951 kb on - strand at 154.951 kb on - strand at 155.058 kb on - strand, within AZOBR_RS33270 at 155.090 kb on + strand, within AZOBR_RS33270 at 155.360 kb on + strand, within AZOBR_RS33270 at 155.361 kb on - strand, within AZOBR_RS33270 at 155.361 kb on - strand, within AZOBR_RS33270 at 155.409 kb on - strand at 155.595 kb on + strand at 155.595 kb on + strand at 155.595 kb on + strand at 155.595 kb on + strand at 155.606 kb on - strand at 155.630 kb on + strand at 155.715 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 153,952 + +0.4 153,959 + +0.4 153,960 - +0.1 153,985 + -0.3 153,985 + -0.1 153,986 - +0.1 153,986 - -0.6 154,173 - AZOBR_RS33260 0.77 -0.0 154,173 - AZOBR_RS33260 0.77 +0.2 154,173 - AZOBR_RS33260 0.77 +0.1 154,174 + AZOBR_RS33260 0.77 -0.2 154,229 + +0.4 154,260 + -0.2 154,362 + AZOBR_RS33265 0.27 +0.1 154,362 + AZOBR_RS33265 0.27 -0.2 154,363 - AZOBR_RS33265 0.27 +1.3 154,363 - AZOBR_RS33265 0.27 +0.9 154,371 + AZOBR_RS33265 0.28 +1.1 154,372 - AZOBR_RS33265 0.29 +0.3 154,495 - AZOBR_RS33265 0.51 -0.0 154,744 + -0.2 154,928 - -0.8 154,928 - -1.6 154,950 + -0.2 154,950 + -1.3 154,950 + -0.6 154,951 - -0.2 154,951 - -0.2 154,951 - -2.8 154,951 - -1.0 154,951 - +0.0 154,951 - +0.3 155,058 - AZOBR_RS33270 0.20 -0.8 155,090 + AZOBR_RS33270 0.26 -1.1 155,360 + AZOBR_RS33270 0.81 -0.2 155,361 - AZOBR_RS33270 0.81 -0.6 155,361 - AZOBR_RS33270 0.81 -0.2 155,409 - -0.3 155,595 + -0.2 155,595 + -0.0 155,595 + -0.2 155,595 + -0.5 155,606 - -0.4 155,630 + +0.1 155,715 - +0.5
Or see this region's nucleotide sequence