Experiment: D-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AZOBR_RS06155 and AZOBR_RS06160 are separated by 43 nucleotides AZOBR_RS06160 and AZOBR_RS06165 are separated by 13 nucleotides AZOBR_RS06165 and AZOBR_RS06170 overlap by 17 nucleotides AZOBR_RS06170 and AZOBR_RS06175 are separated by 216 nucleotides
AZOBR_RS06155: AZOBR_RS06155 - 6-phosphofructokinase, at 1,304,821 to 1,305,906
_RS06155
AZOBR_RS06160: AZOBR_RS06160 - hypothetical protein, at 1,305,950 to 1,306,408
_RS06160
AZOBR_RS06165: AZOBR_RS06165 - GCN5 family N-acetyltransferase, at 1,306,422 to 1,307,009
_RS06165
AZOBR_RS06170: AZOBR_RS06170 - hypothetical protein, at 1,306,993 to 1,307,385
_RS06170
AZOBR_RS06175: AZOBR_RS06175 - hypothetical protein, at 1,307,602 to 1,309,398
_RS06175
Position (kb) 1306
1307
1308 Strain fitness (log2 ratio) -1
0
1 at 1305.595 kb on + strand, within AZOBR_RS06155 at 1305.613 kb on + strand, within AZOBR_RS06155 at 1305.614 kb on - strand, within AZOBR_RS06155 at 1305.835 kb on + strand at 1305.835 kb on + strand at 1305.835 kb on + strand at 1305.836 kb on - strand at 1305.836 kb on - strand at 1305.990 kb on - strand at 1306.214 kb on + strand, within AZOBR_RS06160 at 1306.214 kb on + strand, within AZOBR_RS06160 at 1306.214 kb on + strand, within AZOBR_RS06160 at 1306.706 kb on - strand, within AZOBR_RS06165 at 1306.706 kb on - strand, within AZOBR_RS06165 at 1306.940 kb on + strand, within AZOBR_RS06165 at 1306.941 kb on - strand, within AZOBR_RS06165 at 1307.060 kb on - strand, within AZOBR_RS06170 at 1307.061 kb on - strand, within AZOBR_RS06170 at 1307.061 kb on - strand, within AZOBR_RS06170 at 1307.061 kb on - strand, within AZOBR_RS06170 at 1307.167 kb on + strand, within AZOBR_RS06170 at 1307.430 kb on + strand at 1307.465 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Lactate (C) remove 1,305,595 + AZOBR_RS06155 0.71 +0.8 1,305,613 + AZOBR_RS06155 0.73 +1.3 1,305,614 - AZOBR_RS06155 0.73 +0.5 1,305,835 + +0.0 1,305,835 + +0.7 1,305,835 + +0.2 1,305,836 - -0.1 1,305,836 - +0.3 1,305,990 - -0.4 1,306,214 + AZOBR_RS06160 0.58 -0.3 1,306,214 + AZOBR_RS06160 0.58 -0.5 1,306,214 + AZOBR_RS06160 0.58 +0.2 1,306,706 - AZOBR_RS06165 0.48 -0.0 1,306,706 - AZOBR_RS06165 0.48 +0.0 1,306,940 + AZOBR_RS06165 0.88 -1.3 1,306,941 - AZOBR_RS06165 0.88 -0.3 1,307,060 - AZOBR_RS06170 0.17 +1.2 1,307,061 - AZOBR_RS06170 0.17 +0.4 1,307,061 - AZOBR_RS06170 0.17 -1.4 1,307,061 - AZOBR_RS06170 0.17 +0.3 1,307,167 + AZOBR_RS06170 0.44 +0.1 1,307,430 + +1.6 1,307,465 - +0.3
Or see this region's nucleotide sequence