Strain Fitness in Azospirillum brasilense Sp245 around AZOBR_RS00025

Experiment: D-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAZOBR_RS07930 and AZOBR_RS07935 are separated by 72 nucleotidesAZOBR_RS07935 and AZOBR_RS00025 are separated by 204 nucleotidesAZOBR_RS00025 and AZOBR_RS07940 are separated by 173 nucleotides AZOBR_RS07930: AZOBR_RS07930 - spermidine/putrescine ABC transporter substrate-binding protein, at 1,671,095 to 1,671,782 _RS07930 AZOBR_RS07935: AZOBR_RS07935 - hypothetical protein, at 1,671,855 to 1,672,043 _RS07935 AZOBR_RS00025: AZOBR_RS00025 - TPP, at 1,672,248 to 1,672,360 _RS00025 AZOBR_RS07940: AZOBR_RS07940 - phosphomethylpyrimidine synthase, at 1,672,534 to 1,674,318 _RS07940 Position (kb) 1672 1673Strain fitness (log2 ratio) -3 -2 -1 0 1at 1671.484 kb on - strand, within AZOBR_RS07930at 1672.294 kb on + strand, within AZOBR_RS00025at 1672.337 kb on + strand, within AZOBR_RS00025at 1672.452 kb on + strandat 1672.452 kb on + strandat 1672.452 kb on + strandat 1672.452 kb on + strandat 1672.452 kb on + strandat 1672.453 kb on - strandat 1672.453 kb on - strandat 1672.453 kb on - strandat 1672.453 kb on - strandat 1672.453 kb on - strandat 1672.763 kb on - strand, within AZOBR_RS07940at 1672.894 kb on + strand, within AZOBR_RS07940at 1672.930 kb on + strand, within AZOBR_RS07940

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Lactate (C)
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1,671,484 - AZOBR_RS07930 0.57 -0.6
1,672,294 + AZOBR_RS00025 0.41 -1.0
1,672,337 + AZOBR_RS00025 0.79 -2.9
1,672,452 + +0.1
1,672,452 + +0.2
1,672,452 + +0.0
1,672,452 + -0.5
1,672,452 + -0.9
1,672,453 - -1.9
1,672,453 - -2.1
1,672,453 - -2.2
1,672,453 - -2.4
1,672,453 - -2.1
1,672,763 - AZOBR_RS07940 0.13 -3.5
1,672,894 + AZOBR_RS07940 0.20 -1.6
1,672,930 + AZOBR_RS07940 0.22 -3.0

Or see this region's nucleotide sequence