Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS17395

Experiment: Zinc 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS17385 and ABZR86_RS17390 are separated by 29 nucleotidesABZR86_RS17390 and ABZR86_RS17395 are separated by 214 nucleotidesABZR86_RS17395 and ABZR86_RS17400 are separated by 637 nucleotides ABZR86_RS17385: ABZR86_RS17385 - NAD(P)-dependent oxidoreductase, at 3,927,290 to 3,928,108 _RS17385 ABZR86_RS17390: ABZR86_RS17390 - VOC family protein, at 3,928,138 to 3,928,560 _RS17390 ABZR86_RS17395: ABZR86_RS17395 - sigma-54 dependent transcriptional regulator, at 3,928,775 to 3,930,112 _RS17395 ABZR86_RS17400: ABZR86_RS17400 - acetylornithine transaminase, at 3,930,750 to 3,931,985 _RS17400 Position (kb) 3928 3929 3930 3931Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3927.780 kb on - strand, within ABZR86_RS17385at 3927.780 kb on - strand, within ABZR86_RS17385at 3927.780 kb on - strand, within ABZR86_RS17385at 3927.780 kb on - strand, within ABZR86_RS17385at 3928.058 kb on + strandat 3928.058 kb on + strandat 3928.059 kb on - strandat 3928.059 kb on - strandat 3928.095 kb on + strandat 3928.095 kb on + strandat 3928.095 kb on + strandat 3928.096 kb on - strandat 3928.132 kb on + strandat 3928.132 kb on + strandat 3928.133 kb on - strandat 3928.133 kb on - strandat 3928.133 kb on - strandat 3928.144 kb on + strandat 3928.144 kb on + strandat 3928.145 kb on - strandat 3928.145 kb on - strandat 3928.145 kb on - strandat 3928.264 kb on + strand, within ABZR86_RS17390at 3928.264 kb on + strand, within ABZR86_RS17390at 3928.265 kb on - strand, within ABZR86_RS17390at 3928.265 kb on - strand, within ABZR86_RS17390at 3928.265 kb on - strand, within ABZR86_RS17390at 3928.265 kb on - strand, within ABZR86_RS17390at 3928.309 kb on + strand, within ABZR86_RS17390at 3928.310 kb on - strand, within ABZR86_RS17390at 3928.310 kb on - strand, within ABZR86_RS17390at 3928.310 kb on - strand, within ABZR86_RS17390at 3928.310 kb on - strand, within ABZR86_RS17390at 3928.310 kb on - strand, within ABZR86_RS17390at 3928.333 kb on + strand, within ABZR86_RS17390at 3928.333 kb on + strand, within ABZR86_RS17390at 3928.333 kb on + strand, within ABZR86_RS17390at 3928.334 kb on - strand, within ABZR86_RS17390at 3928.334 kb on - strand, within ABZR86_RS17390at 3928.334 kb on - strand, within ABZR86_RS17390at 3928.384 kb on + strand, within ABZR86_RS17390at 3928.384 kb on + strand, within ABZR86_RS17390at 3928.385 kb on - strand, within ABZR86_RS17390at 3928.385 kb on - strand, within ABZR86_RS17390at 3928.385 kb on - strand, within ABZR86_RS17390at 3928.385 kb on - strand, within ABZR86_RS17390at 3928.385 kb on - strand, within ABZR86_RS17390at 3928.385 kb on - strand, within ABZR86_RS17390at 3928.385 kb on - strand, within ABZR86_RS17390at 3928.417 kb on + strand, within ABZR86_RS17390at 3928.418 kb on - strand, within ABZR86_RS17390at 3928.418 kb on - strand, within ABZR86_RS17390at 3928.418 kb on - strand, within ABZR86_RS17390at 3928.418 kb on - strand, within ABZR86_RS17390at 3928.418 kb on - strand, within ABZR86_RS17390at 3928.418 kb on - strand, within ABZR86_RS17390at 3928.546 kb on - strandat 3928.546 kb on - strandat 3928.558 kb on + strandat 3928.559 kb on - strandat 3928.653 kb on + strandat 3928.653 kb on + strandat 3928.653 kb on + strandat 3928.654 kb on - strandat 3928.654 kb on - strandat 3928.654 kb on - strandat 3928.654 kb on - strandat 3928.655 kb on + strandat 3928.669 kb on + strandat 3928.669 kb on + strandat 3928.669 kb on + strandat 3928.670 kb on - strandat 3928.670 kb on - strandat 3928.670 kb on - strandat 3928.683 kb on - strandat 3928.768 kb on + strandat 3928.769 kb on - strandat 3928.769 kb on - strandat 3928.868 kb on + strandat 3928.869 kb on - strandat 3928.869 kb on - strandat 3928.869 kb on - strandat 3928.924 kb on + strand, within ABZR86_RS17395at 3928.925 kb on - strand, within ABZR86_RS17395at 3928.925 kb on - strand, within ABZR86_RS17395at 3928.925 kb on - strand, within ABZR86_RS17395at 3928.925 kb on - strand, within ABZR86_RS17395at 3929.077 kb on + strand, within ABZR86_RS17395at 3929.077 kb on + strand, within ABZR86_RS17395at 3929.077 kb on + strand, within ABZR86_RS17395at 3929.077 kb on + strand, within ABZR86_RS17395at 3929.077 kb on + strand, within ABZR86_RS17395at 3929.078 kb on - strand, within ABZR86_RS17395at 3929.078 kb on - strand, within ABZR86_RS17395at 3929.078 kb on - strand, within ABZR86_RS17395at 3929.138 kb on + strand, within ABZR86_RS17395at 3929.185 kb on - strand, within ABZR86_RS17395at 3929.185 kb on - strand, within ABZR86_RS17395at 3929.235 kb on - strand, within ABZR86_RS17395at 3929.235 kb on - strand, within ABZR86_RS17395at 3929.235 kb on - strand, within ABZR86_RS17395at 3929.235 kb on - strand, within ABZR86_RS17395at 3929.235 kb on - strand, within ABZR86_RS17395at 3929.657 kb on + strand, within ABZR86_RS17395at 3929.657 kb on + strand, within ABZR86_RS17395at 3929.657 kb on + strand, within ABZR86_RS17395at 3929.657 kb on + strand, within ABZR86_RS17395at 3929.657 kb on + strand, within ABZR86_RS17395at 3929.657 kb on + strand, within ABZR86_RS17395at 3929.657 kb on + strand, within ABZR86_RS17395at 3929.658 kb on - strand, within ABZR86_RS17395at 3929.658 kb on - strand, within ABZR86_RS17395at 3929.658 kb on - strand, within ABZR86_RS17395at 3929.658 kb on - strand, within ABZR86_RS17395at 3929.658 kb on - strand, within ABZR86_RS17395at 3929.660 kb on + strand, within ABZR86_RS17395at 3929.661 kb on - strand, within ABZR86_RS17395at 3929.661 kb on - strand, within ABZR86_RS17395at 3930.016 kb on - strandat 3930.065 kb on + strandat 3930.065 kb on + strandat 3930.065 kb on + strandat 3930.065 kb on + strandat 3930.066 kb on - strandat 3930.066 kb on - strandat 3930.066 kb on - strandat 3930.066 kb on - strandat 3930.066 kb on - strandat 3930.068 kb on - strandat 3930.147 kb on + strandat 3930.148 kb on - strandat 3930.181 kb on + strandat 3930.181 kb on + strandat 3930.181 kb on + strandat 3930.289 kb on + strandat 3930.290 kb on - strandat 3930.315 kb on + strandat 3930.315 kb on + strandat 3930.315 kb on + strandat 3930.315 kb on + strandat 3930.315 kb on + strandat 3930.315 kb on + strandat 3930.316 kb on - strandat 3930.422 kb on + strandat 3930.422 kb on + strandat 3930.516 kb on + strandat 3930.517 kb on - strandat 3930.517 kb on - strandat 3930.517 kb on - strandat 3930.586 kb on + strandat 3930.663 kb on + strandat 3930.663 kb on + strandat 3930.663 kb on + strandat 3930.663 kb on + strandat 3930.663 kb on + strandat 3930.664 kb on - strandat 3930.664 kb on - strandat 3930.664 kb on - strandat 3930.696 kb on + strandat 3930.697 kb on - strandat 3930.799 kb on - strandat 3930.813 kb on + strandat 3930.813 kb on + strandat 3930.813 kb on + strandat 3930.813 kb on + strandat 3930.813 kb on + strandat 3930.813 kb on + strandat 3930.813 kb on + strandat 3930.814 kb on - strandat 3930.814 kb on - strandat 3930.832 kb on + strandat 3930.833 kb on - strandat 3930.882 kb on + strand, within ABZR86_RS17400at 3930.882 kb on + strand, within ABZR86_RS17400at 3930.882 kb on + strand, within ABZR86_RS17400at 3930.882 kb on + strand, within ABZR86_RS17400at 3930.882 kb on + strand, within ABZR86_RS17400at 3930.883 kb on - strand, within ABZR86_RS17400at 3930.883 kb on - strand, within ABZR86_RS17400at 3930.883 kb on - strand, within ABZR86_RS17400at 3930.883 kb on - strand, within ABZR86_RS17400at 3930.883 kb on - strand, within ABZR86_RS17400at 3930.883 kb on - strand, within ABZR86_RS17400at 3930.883 kb on - strand, within ABZR86_RS17400at 3930.883 kb on - strand, within ABZR86_RS17400at 3930.883 kb on - strand, within ABZR86_RS17400at 3930.883 kb on - strand, within ABZR86_RS17400at 3930.996 kb on + strand, within ABZR86_RS17400at 3930.997 kb on - strand, within ABZR86_RS17400at 3930.997 kb on - strand, within ABZR86_RS17400

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Per-strain Table

Position Strand Gene LocusTag Fraction Zinc 2.5 mM
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3,927,780 - ABZR86_RS17385 0.60 +0.9
3,927,780 - ABZR86_RS17385 0.60 +0.2
3,927,780 - ABZR86_RS17385 0.60 -2.2
3,927,780 - ABZR86_RS17385 0.60 -1.6
3,928,058 + +1.2
3,928,058 + -0.1
3,928,059 - -1.8
3,928,059 - -1.9
3,928,095 + +0.1
3,928,095 + +0.6
3,928,095 + +0.6
3,928,096 - +0.2
3,928,132 + +0.0
3,928,132 + -0.2
3,928,133 - -0.3
3,928,133 - +0.1
3,928,133 - +0.3
3,928,144 + -0.8
3,928,144 + +1.0
3,928,145 - -0.3
3,928,145 - +0.2
3,928,145 - -1.1
3,928,264 + ABZR86_RS17390 0.30 -1.0
3,928,264 + ABZR86_RS17390 0.30 -0.0
3,928,265 - ABZR86_RS17390 0.30 -1.8
3,928,265 - ABZR86_RS17390 0.30 +0.6
3,928,265 - ABZR86_RS17390 0.30 +0.5
3,928,265 - ABZR86_RS17390 0.30 +0.2
3,928,309 + ABZR86_RS17390 0.40 -0.4
3,928,310 - ABZR86_RS17390 0.41 +0.8
3,928,310 - ABZR86_RS17390 0.41 +0.8
3,928,310 - ABZR86_RS17390 0.41 -0.5
3,928,310 - ABZR86_RS17390 0.41 +0.3
3,928,310 - ABZR86_RS17390 0.41 -0.7
3,928,333 + ABZR86_RS17390 0.46 -0.6
3,928,333 + ABZR86_RS17390 0.46 +0.8
3,928,333 + ABZR86_RS17390 0.46 +0.9
3,928,334 - ABZR86_RS17390 0.46 -0.1
3,928,334 - ABZR86_RS17390 0.46 +1.3
3,928,334 - ABZR86_RS17390 0.46 -0.1
3,928,384 + ABZR86_RS17390 0.58 -0.1
3,928,384 + ABZR86_RS17390 0.58 -2.0
3,928,385 - ABZR86_RS17390 0.58 +0.1
3,928,385 - ABZR86_RS17390 0.58 -1.8
3,928,385 - ABZR86_RS17390 0.58 -0.6
3,928,385 - ABZR86_RS17390 0.58 +1.1
3,928,385 - ABZR86_RS17390 0.58 -0.2
3,928,385 - ABZR86_RS17390 0.58 -0.0
3,928,385 - ABZR86_RS17390 0.58 +0.1
3,928,417 + ABZR86_RS17390 0.66 -0.3
3,928,418 - ABZR86_RS17390 0.66 +0.5
3,928,418 - ABZR86_RS17390 0.66 +1.2
3,928,418 - ABZR86_RS17390 0.66 +1.3
3,928,418 - ABZR86_RS17390 0.66 -0.5
3,928,418 - ABZR86_RS17390 0.66 -0.4
3,928,418 - ABZR86_RS17390 0.66 +0.6
3,928,546 - -1.6
3,928,546 - +1.0
3,928,558 + -2.0
3,928,559 - -1.2
3,928,653 + -0.6
3,928,653 + -0.6
3,928,653 + +0.5
3,928,654 - +0.3
3,928,654 - -0.2
3,928,654 - +0.3
3,928,654 - -0.8
3,928,655 + -1.7
3,928,669 + -2.3
3,928,669 + -0.1
3,928,669 + +0.8
3,928,670 - +0.1
3,928,670 - -0.2
3,928,670 - +0.4
3,928,683 - +0.6
3,928,768 + -3.0
3,928,769 - -1.5
3,928,769 - +0.9
3,928,868 + +0.1
3,928,869 - -1.1
3,928,869 - -0.6
3,928,869 - -0.2
3,928,924 + ABZR86_RS17395 0.11 +0.1
3,928,925 - ABZR86_RS17395 0.11 +0.2
3,928,925 - ABZR86_RS17395 0.11 +0.8
3,928,925 - ABZR86_RS17395 0.11 -2.8
3,928,925 - ABZR86_RS17395 0.11 +0.8
3,929,077 + ABZR86_RS17395 0.23 +0.4
3,929,077 + ABZR86_RS17395 0.23 +0.4
3,929,077 + ABZR86_RS17395 0.23 -0.1
3,929,077 + ABZR86_RS17395 0.23 -0.7
3,929,077 + ABZR86_RS17395 0.23 -0.7
3,929,078 - ABZR86_RS17395 0.23 +0.2
3,929,078 - ABZR86_RS17395 0.23 +0.1
3,929,078 - ABZR86_RS17395 0.23 -0.9
3,929,138 + ABZR86_RS17395 0.27 +0.0
3,929,185 - ABZR86_RS17395 0.31 -0.0
3,929,185 - ABZR86_RS17395 0.31 +0.3
3,929,235 - ABZR86_RS17395 0.34 -0.1
3,929,235 - ABZR86_RS17395 0.34 -1.1
3,929,235 - ABZR86_RS17395 0.34 +0.7
3,929,235 - ABZR86_RS17395 0.34 +0.3
3,929,235 - ABZR86_RS17395 0.34 +1.0
3,929,657 + ABZR86_RS17395 0.66 -0.2
3,929,657 + ABZR86_RS17395 0.66 +0.3
3,929,657 + ABZR86_RS17395 0.66 -0.1
3,929,657 + ABZR86_RS17395 0.66 +1.3
3,929,657 + ABZR86_RS17395 0.66 +0.4
3,929,657 + ABZR86_RS17395 0.66 +0.2
3,929,657 + ABZR86_RS17395 0.66 +0.5
3,929,658 - ABZR86_RS17395 0.66 +2.3
3,929,658 - ABZR86_RS17395 0.66 +0.0
3,929,658 - ABZR86_RS17395 0.66 -1.1
3,929,658 - ABZR86_RS17395 0.66 -0.4
3,929,658 - ABZR86_RS17395 0.66 -0.5
3,929,660 + ABZR86_RS17395 0.66 +0.8
3,929,661 - ABZR86_RS17395 0.66 +1.1
3,929,661 - ABZR86_RS17395 0.66 -0.7
3,930,016 - +0.6
3,930,065 + +0.3
3,930,065 + +0.1
3,930,065 + +0.2
3,930,065 + -0.6
3,930,066 - +1.2
3,930,066 - -0.3
3,930,066 - +0.2
3,930,066 - +0.0
3,930,066 - +0.0
3,930,068 - -0.9
3,930,147 + -1.4
3,930,148 - +0.5
3,930,181 + -2.9
3,930,181 + +0.7
3,930,181 + -0.1
3,930,289 + +0.2
3,930,290 - -1.6
3,930,315 + -0.0
3,930,315 + -0.3
3,930,315 + +1.7
3,930,315 + -0.0
3,930,315 + -2.4
3,930,315 + -0.4
3,930,316 - +0.1
3,930,422 + +0.2
3,930,422 + -0.3
3,930,516 + +0.1
3,930,517 - +0.5
3,930,517 - +0.4
3,930,517 - -0.6
3,930,586 + +1.3
3,930,663 + +0.4
3,930,663 + -1.3
3,930,663 + +0.5
3,930,663 + +0.6
3,930,663 + +0.4
3,930,664 - +0.4
3,930,664 - -0.3
3,930,664 - -0.0
3,930,696 + +0.2
3,930,697 - +0.4
3,930,799 - -1.7
3,930,813 + +1.1
3,930,813 + -0.1
3,930,813 + +0.9
3,930,813 + +0.2
3,930,813 + +0.4
3,930,813 + -0.8
3,930,813 + +0.3
3,930,814 - -0.3
3,930,814 - -0.9
3,930,832 + +0.3
3,930,833 - -0.1
3,930,882 + ABZR86_RS17400 0.11 +0.1
3,930,882 + ABZR86_RS17400 0.11 +0.4
3,930,882 + ABZR86_RS17400 0.11 -1.0
3,930,882 + ABZR86_RS17400 0.11 +0.5
3,930,882 + ABZR86_RS17400 0.11 +0.1
3,930,883 - ABZR86_RS17400 0.11 +0.5
3,930,883 - ABZR86_RS17400 0.11 +0.8
3,930,883 - ABZR86_RS17400 0.11 +0.1
3,930,883 - ABZR86_RS17400 0.11 -0.5
3,930,883 - ABZR86_RS17400 0.11 -0.3
3,930,883 - ABZR86_RS17400 0.11 -0.2
3,930,883 - ABZR86_RS17400 0.11 +0.1
3,930,883 - ABZR86_RS17400 0.11 +0.1
3,930,883 - ABZR86_RS17400 0.11 +0.9
3,930,883 - ABZR86_RS17400 0.11 -0.1
3,930,996 + ABZR86_RS17400 0.20 -1.5
3,930,997 - ABZR86_RS17400 0.20 +0.1
3,930,997 - ABZR86_RS17400 0.20 -0.1

Or see this region's nucleotide sequence