Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS17275

Experiment: Zinc 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS17270 and ABZR86_RS17275 are separated by 543 nucleotidesABZR86_RS17275 and ABZR86_RS17280 are separated by 4 nucleotidesABZR86_RS17280 and ABZR86_RS17285 are separated by 97 nucleotides ABZR86_RS17270: ABZR86_RS17270 - chloride channel protein, at 3,899,417 to 3,901,183 _RS17270 ABZR86_RS17275: ABZR86_RS17275 - glyoxalase superfamily protein, at 3,901,727 to 3,902,089 _RS17275 ABZR86_RS17280: ABZR86_RS17280 - hypothetical protein, at 3,902,094 to 3,902,837 _RS17280 ABZR86_RS17285: ABZR86_RS17285 - S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase, at 3,902,935 to 3,904,044 _RS17285 Position (kb) 3901 3902 3903Strain fitness (log2 ratio) -3 -2 -1 0 1at 3901.047 kb on + strandat 3901.048 kb on - strandat 3901.323 kb on - strandat 3901.323 kb on - strandat 3901.425 kb on - strandat 3901.690 kb on + strandat 3901.690 kb on + strandat 3901.690 kb on + strandat 3901.690 kb on + strandat 3901.691 kb on - strandat 3901.691 kb on - strandat 3901.708 kb on + strandat 3901.708 kb on + strandat 3901.709 kb on - strandat 3901.709 kb on - strandat 3901.709 kb on - strandat 3901.711 kb on - strandat 3901.711 kb on - strandat 3901.790 kb on + strand, within ABZR86_RS17275at 3901.790 kb on + strand, within ABZR86_RS17275at 3901.790 kb on + strand, within ABZR86_RS17275at 3901.791 kb on - strand, within ABZR86_RS17275at 3901.791 kb on - strand, within ABZR86_RS17275at 3901.791 kb on - strand, within ABZR86_RS17275at 3901.791 kb on - strand, within ABZR86_RS17275at 3901.791 kb on - strand, within ABZR86_RS17275at 3901.853 kb on + strand, within ABZR86_RS17275at 3901.854 kb on - strand, within ABZR86_RS17275at 3901.854 kb on - strand, within ABZR86_RS17275at 3901.864 kb on - strand, within ABZR86_RS17275at 3901.864 kb on - strand, within ABZR86_RS17275at 3901.949 kb on - strand, within ABZR86_RS17275at 3901.986 kb on - strand, within ABZR86_RS17275at 3901.986 kb on - strand, within ABZR86_RS17275at 3901.986 kb on - strand, within ABZR86_RS17275at 3902.075 kb on + strandat 3902.075 kb on + strandat 3902.076 kb on - strandat 3902.088 kb on - strandat 3902.293 kb on + strand, within ABZR86_RS17280at 3902.293 kb on + strand, within ABZR86_RS17280at 3902.294 kb on - strand, within ABZR86_RS17280at 3902.294 kb on - strand, within ABZR86_RS17280at 3902.294 kb on - strand, within ABZR86_RS17280at 3902.464 kb on + strand, within ABZR86_RS17280at 3902.465 kb on - strand, within ABZR86_RS17280at 3902.488 kb on + strand, within ABZR86_RS17280at 3902.489 kb on - strand, within ABZR86_RS17280at 3902.489 kb on - strand, within ABZR86_RS17280at 3902.489 kb on - strand, within ABZR86_RS17280at 3902.602 kb on + strand, within ABZR86_RS17280at 3902.605 kb on + strand, within ABZR86_RS17280at 3902.620 kb on + strand, within ABZR86_RS17280at 3902.620 kb on + strand, within ABZR86_RS17280at 3902.620 kb on + strand, within ABZR86_RS17280at 3902.620 kb on + strand, within ABZR86_RS17280at 3902.621 kb on - strand, within ABZR86_RS17280at 3902.621 kb on - strand, within ABZR86_RS17280at 3902.621 kb on - strand, within ABZR86_RS17280at 3902.621 kb on - strand, within ABZR86_RS17280at 3902.621 kb on - strand, within ABZR86_RS17280at 3902.621 kb on - strand, within ABZR86_RS17280at 3902.642 kb on + strand, within ABZR86_RS17280at 3902.682 kb on + strand, within ABZR86_RS17280at 3902.788 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Zinc 2.5 mM
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3,901,047 + +1.0
3,901,048 - -0.9
3,901,323 - +0.1
3,901,323 - -0.8
3,901,425 - +0.8
3,901,690 + +0.0
3,901,690 + +0.5
3,901,690 + -1.3
3,901,690 + -0.6
3,901,691 - +0.4
3,901,691 - -0.7
3,901,708 + +0.2
3,901,708 + +0.4
3,901,709 - +0.4
3,901,709 - +1.2
3,901,709 - -0.2
3,901,711 - -0.6
3,901,711 - -0.3
3,901,790 + ABZR86_RS17275 0.17 -0.5
3,901,790 + ABZR86_RS17275 0.17 +0.3
3,901,790 + ABZR86_RS17275 0.17 -0.3
3,901,791 - ABZR86_RS17275 0.18 +0.7
3,901,791 - ABZR86_RS17275 0.18 +0.5
3,901,791 - ABZR86_RS17275 0.18 -0.0
3,901,791 - ABZR86_RS17275 0.18 -1.1
3,901,791 - ABZR86_RS17275 0.18 -0.9
3,901,853 + ABZR86_RS17275 0.35 -0.2
3,901,854 - ABZR86_RS17275 0.35 +0.2
3,901,854 - ABZR86_RS17275 0.35 +0.3
3,901,864 - ABZR86_RS17275 0.38 -0.9
3,901,864 - ABZR86_RS17275 0.38 -0.3
3,901,949 - ABZR86_RS17275 0.61 +0.5
3,901,986 - ABZR86_RS17275 0.71 +1.1
3,901,986 - ABZR86_RS17275 0.71 +0.2
3,901,986 - ABZR86_RS17275 0.71 -3.0
3,902,075 + +0.4
3,902,075 + +1.2
3,902,076 - +1.0
3,902,088 - -0.7
3,902,293 + ABZR86_RS17280 0.27 -0.8
3,902,293 + ABZR86_RS17280 0.27 -0.4
3,902,294 - ABZR86_RS17280 0.27 -0.7
3,902,294 - ABZR86_RS17280 0.27 +1.0
3,902,294 - ABZR86_RS17280 0.27 -0.7
3,902,464 + ABZR86_RS17280 0.50 +0.2
3,902,465 - ABZR86_RS17280 0.50 -1.0
3,902,488 + ABZR86_RS17280 0.53 +0.4
3,902,489 - ABZR86_RS17280 0.53 +0.4
3,902,489 - ABZR86_RS17280 0.53 -0.0
3,902,489 - ABZR86_RS17280 0.53 +0.9
3,902,602 + ABZR86_RS17280 0.68 -2.8
3,902,605 + ABZR86_RS17280 0.69 +0.6
3,902,620 + ABZR86_RS17280 0.71 -0.2
3,902,620 + ABZR86_RS17280 0.71 -0.1
3,902,620 + ABZR86_RS17280 0.71 +0.3
3,902,620 + ABZR86_RS17280 0.71 -0.7
3,902,621 - ABZR86_RS17280 0.71 +1.0
3,902,621 - ABZR86_RS17280 0.71 -1.4
3,902,621 - ABZR86_RS17280 0.71 +0.6
3,902,621 - ABZR86_RS17280 0.71 -1.0
3,902,621 - ABZR86_RS17280 0.71 -0.1
3,902,621 - ABZR86_RS17280 0.71 -0.1
3,902,642 + ABZR86_RS17280 0.74 +0.7
3,902,682 + ABZR86_RS17280 0.79 +0.2
3,902,788 + +0.1

Or see this region's nucleotide sequence