Experiment: Zinc 2.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS16180 and ABZR86_RS16185 overlap by 1 nucleotides ABZR86_RS16185 and ABZR86_RS16190 are separated by 115 nucleotides ABZR86_RS16190 and ABZR86_RS16195 are separated by 159 nucleotides
ABZR86_RS16180: ABZR86_RS16180 - Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB, at 3,654,623 to 3,655,900
_RS16180
ABZR86_RS16185: ABZR86_RS16185 - NAD-dependent epimerase, at 3,655,900 to 3,656,910
_RS16185
ABZR86_RS16190: ABZR86_RS16190 - hypothetical protein, at 3,657,026 to 3,657,598
_RS16190
ABZR86_RS16195: ABZR86_RS16195 - NADPH-dependent 7-cyano-7-deazaguanine reductase QueF, at 3,657,758 to 3,658,579
_RS16195
Position (kb)
3655
3656
3657 Strain fitness (log2 ratio)
-1
0
1
2
3 at 3654.974 kb on + strand, within ABZR86_RS16180 at 3654.974 kb on + strand, within ABZR86_RS16180 at 3654.974 kb on + strand, within ABZR86_RS16180 at 3654.974 kb on + strand, within ABZR86_RS16180 at 3654.974 kb on + strand, within ABZR86_RS16180 at 3655.328 kb on - strand, within ABZR86_RS16180 at 3655.328 kb on - strand, within ABZR86_RS16180 at 3655.425 kb on - strand, within ABZR86_RS16180 at 3655.758 kb on - strand, within ABZR86_RS16180 at 3655.758 kb on - strand, within ABZR86_RS16180 at 3655.758 kb on - strand, within ABZR86_RS16180 at 3655.827 kb on - strand at 3655.827 kb on - strand at 3655.851 kb on - strand at 3655.862 kb on + strand at 3656.065 kb on - strand, within ABZR86_RS16185 at 3656.065 kb on - strand, within ABZR86_RS16185 at 3656.065 kb on - strand, within ABZR86_RS16185 at 3656.065 kb on - strand, within ABZR86_RS16185 at 3656.065 kb on - strand, within ABZR86_RS16185 at 3656.065 kb on - strand, within ABZR86_RS16185 at 3656.065 kb on - strand, within ABZR86_RS16185 at 3656.124 kb on + strand, within ABZR86_RS16185 at 3656.124 kb on + strand, within ABZR86_RS16185 at 3656.354 kb on - strand, within ABZR86_RS16185 at 3656.395 kb on + strand, within ABZR86_RS16185 at 3656.718 kb on + strand, within ABZR86_RS16185 at 3656.865 kb on + strand at 3656.866 kb on - strand at 3656.897 kb on - strand at 3656.924 kb on + strand at 3656.924 kb on + strand at 3656.925 kb on - strand at 3657.008 kb on + strand at 3657.008 kb on + strand at 3657.093 kb on + strand, within ABZR86_RS16190 at 3657.093 kb on + strand, within ABZR86_RS16190 at 3657.094 kb on - strand, within ABZR86_RS16190 at 3657.207 kb on + strand, within ABZR86_RS16190 at 3657.207 kb on + strand, within ABZR86_RS16190 at 3657.208 kb on - strand, within ABZR86_RS16190 at 3657.208 kb on - strand, within ABZR86_RS16190 at 3657.208 kb on - strand, within ABZR86_RS16190 at 3657.208 kb on - strand, within ABZR86_RS16190 at 3657.208 kb on - strand, within ABZR86_RS16190 at 3657.267 kb on + strand, within ABZR86_RS16190 at 3657.267 kb on + strand, within ABZR86_RS16190 at 3657.267 kb on + strand, within ABZR86_RS16190 at 3657.267 kb on + strand, within ABZR86_RS16190 at 3657.268 kb on - strand, within ABZR86_RS16190 at 3657.268 kb on - strand, within ABZR86_RS16190 at 3657.268 kb on - strand, within ABZR86_RS16190 at 3657.268 kb on - strand, within ABZR86_RS16190 at 3657.670 kb on + strand at 3657.671 kb on - strand at 3657.671 kb on - strand at 3657.759 kb on + strand at 3657.759 kb on + strand at 3657.759 kb on + strand at 3657.760 kb on - strand at 3657.841 kb on + strand, within ABZR86_RS16195 at 3657.841 kb on + strand, within ABZR86_RS16195 at 3657.841 kb on + strand, within ABZR86_RS16195 at 3657.841 kb on + strand, within ABZR86_RS16195 at 3657.844 kb on - strand, within ABZR86_RS16195 at 3657.852 kb on + strand, within ABZR86_RS16195 at 3657.853 kb on - strand, within ABZR86_RS16195
Per-strain Table
Position Strand Gene LocusTag Fraction Zinc 2.5 mM remove 3,654,974 + ABZR86_RS16180 0.27 -0.1 3,654,974 + ABZR86_RS16180 0.27 -0.2 3,654,974 + ABZR86_RS16180 0.27 +0.0 3,654,974 + ABZR86_RS16180 0.27 -1.1 3,654,974 + ABZR86_RS16180 0.27 -0.3 3,655,328 - ABZR86_RS16180 0.55 +0.8 3,655,328 - ABZR86_RS16180 0.55 -0.1 3,655,425 - ABZR86_RS16180 0.63 -1.0 3,655,758 - ABZR86_RS16180 0.89 +0.0 3,655,758 - ABZR86_RS16180 0.89 +0.2 3,655,758 - ABZR86_RS16180 0.89 +0.4 3,655,827 - +0.6 3,655,827 - +0.1 3,655,851 - -0.2 3,655,862 + +1.1 3,656,065 - ABZR86_RS16185 0.16 +0.5 3,656,065 - ABZR86_RS16185 0.16 +0.5 3,656,065 - ABZR86_RS16185 0.16 +0.6 3,656,065 - ABZR86_RS16185 0.16 -0.4 3,656,065 - ABZR86_RS16185 0.16 +0.3 3,656,065 - ABZR86_RS16185 0.16 +1.4 3,656,065 - ABZR86_RS16185 0.16 -0.4 3,656,124 + ABZR86_RS16185 0.22 -0.5 3,656,124 + ABZR86_RS16185 0.22 +0.3 3,656,354 - ABZR86_RS16185 0.45 +0.7 3,656,395 + ABZR86_RS16185 0.49 +0.3 3,656,718 + ABZR86_RS16185 0.81 +0.2 3,656,865 + +0.3 3,656,866 - +1.3 3,656,897 - +0.8 3,656,924 + +0.6 3,656,924 + -1.1 3,656,925 - +0.3 3,657,008 + -0.0 3,657,008 + -0.1 3,657,093 + ABZR86_RS16190 0.12 -0.5 3,657,093 + ABZR86_RS16190 0.12 -0.7 3,657,094 - ABZR86_RS16190 0.12 +0.4 3,657,207 + ABZR86_RS16190 0.32 +0.5 3,657,207 + ABZR86_RS16190 0.32 +0.1 3,657,208 - ABZR86_RS16190 0.32 +1.5 3,657,208 - ABZR86_RS16190 0.32 -0.1 3,657,208 - ABZR86_RS16190 0.32 -1.0 3,657,208 - ABZR86_RS16190 0.32 +0.5 3,657,208 - ABZR86_RS16190 0.32 +0.7 3,657,267 + ABZR86_RS16190 0.42 -0.7 3,657,267 + ABZR86_RS16190 0.42 -1.0 3,657,267 + ABZR86_RS16190 0.42 +0.3 3,657,267 + ABZR86_RS16190 0.42 -0.3 3,657,268 - ABZR86_RS16190 0.42 +0.7 3,657,268 - ABZR86_RS16190 0.42 -0.1 3,657,268 - ABZR86_RS16190 0.42 -0.3 3,657,268 - ABZR86_RS16190 0.42 +1.9 3,657,670 + +1.3 3,657,671 - -0.5 3,657,671 - +0.5 3,657,759 + -0.1 3,657,759 + -0.2 3,657,759 + -0.8 3,657,760 - +0.1 3,657,841 + ABZR86_RS16195 0.10 -0.5 3,657,841 + ABZR86_RS16195 0.10 +3.3 3,657,841 + ABZR86_RS16195 0.10 +0.4 3,657,841 + ABZR86_RS16195 0.10 -1.0 3,657,844 - ABZR86_RS16195 0.10 -1.0 3,657,852 + ABZR86_RS16195 0.11 -0.7 3,657,853 - ABZR86_RS16195 0.12 -0.7
Or see this region's nucleotide sequence