Strain Fitness in Dyella japonica UNC79MFTsu3.2 around ABZR86_RS09150

Experiment: Zinc 2.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR86_RS09140 and ABZR86_RS09145 are separated by 118 nucleotidesABZR86_RS09145 and ABZR86_RS09150 are separated by 2 nucleotidesABZR86_RS09150 and ABZR86_RS09155 are separated by 144 nucleotidesABZR86_RS09155 and ABZR86_RS09160 overlap by 4 nucleotides ABZR86_RS09140: ABZR86_RS09140 - DUF4442 domain-containing protein, at 2,031,579 to 2,032,040 _RS09140 ABZR86_RS09145: ABZR86_RS09145 - hypothetical protein, at 2,032,159 to 2,032,809 _RS09145 ABZR86_RS09150: ABZR86_RS09150 - sigma-70 family RNA polymerase sigma factor, at 2,032,812 to 2,033,324 _RS09150 ABZR86_RS09155: ABZR86_RS09155 - DUF502 domain-containing protein, at 2,033,469 to 2,034,140 _RS09155 ABZR86_RS09160: ABZR86_RS09160 - M14 family metallopeptidase, at 2,034,137 to 2,035,918 _RS09160 Position (kb) 2032 2033 2034Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2031.862 kb on - strand, within ABZR86_RS09140at 2032.002 kb on + strandat 2032.002 kb on + strandat 2032.002 kb on + strandat 2032.002 kb on + strandat 2032.003 kb on - strandat 2032.003 kb on - strandat 2032.003 kb on - strandat 2032.003 kb on - strandat 2032.003 kb on - strandat 2032.003 kb on - strandat 2032.038 kb on + strandat 2032.039 kb on - strandat 2032.050 kb on + strandat 2032.050 kb on + strandat 2032.051 kb on - strandat 2032.051 kb on - strandat 2032.143 kb on + strandat 2032.143 kb on + strandat 2032.143 kb on + strandat 2032.143 kb on + strandat 2032.143 kb on + strandat 2032.143 kb on + strandat 2032.144 kb on - strandat 2032.218 kb on - strandat 2032.352 kb on - strand, within ABZR86_RS09145at 2032.560 kb on - strand, within ABZR86_RS09145at 2032.560 kb on - strand, within ABZR86_RS09145at 2032.918 kb on + strand, within ABZR86_RS09150at 2032.918 kb on + strand, within ABZR86_RS09150at 2032.919 kb on - strand, within ABZR86_RS09150at 2033.298 kb on + strandat 2033.299 kb on - strandat 2033.299 kb on - strandat 2033.299 kb on - strandat 2033.431 kb on + strandat 2033.431 kb on + strandat 2033.493 kb on + strandat 2033.494 kb on - strandat 2033.494 kb on - strandat 2033.703 kb on + strand, within ABZR86_RS09155at 2033.703 kb on + strand, within ABZR86_RS09155at 2033.703 kb on + strand, within ABZR86_RS09155at 2033.704 kb on - strand, within ABZR86_RS09155at 2033.958 kb on + strand, within ABZR86_RS09155at 2033.958 kb on + strand, within ABZR86_RS09155at 2033.959 kb on - strand, within ABZR86_RS09155at 2033.959 kb on - strand, within ABZR86_RS09155at 2033.959 kb on - strand, within ABZR86_RS09155at 2033.959 kb on - strand, within ABZR86_RS09155at 2033.959 kb on - strand, within ABZR86_RS09155at 2033.959 kb on - strand, within ABZR86_RS09155at 2034.062 kb on + strand, within ABZR86_RS09155at 2034.063 kb on - strand, within ABZR86_RS09155at 2034.110 kb on + strandat 2034.111 kb on - strandat 2034.111 kb on - strandat 2034.246 kb on - strandat 2034.246 kb on - strandat 2034.246 kb on - strandat 2034.263 kb on + strandat 2034.263 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Zinc 2.5 mM
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2,031,862 - ABZR86_RS09140 0.61 +0.7
2,032,002 + -1.0
2,032,002 + -0.1
2,032,002 + -0.2
2,032,002 + -0.5
2,032,003 - -0.1
2,032,003 - +0.6
2,032,003 - -0.9
2,032,003 - -1.0
2,032,003 - -2.0
2,032,003 - +0.4
2,032,038 + +0.2
2,032,039 - +0.7
2,032,050 + +0.4
2,032,050 + -0.1
2,032,051 - +0.1
2,032,051 - -3.4
2,032,143 + +0.2
2,032,143 + -1.4
2,032,143 + -0.3
2,032,143 + +0.2
2,032,143 + -0.1
2,032,143 + -2.8
2,032,144 - -0.2
2,032,218 - -2.1
2,032,352 - ABZR86_RS09145 0.30 -1.4
2,032,560 - ABZR86_RS09145 0.62 -1.3
2,032,560 - ABZR86_RS09145 0.62 -3.4
2,032,918 + ABZR86_RS09150 0.21 +0.1
2,032,918 + ABZR86_RS09150 0.21 -0.5
2,032,919 - ABZR86_RS09150 0.21 -0.1
2,033,298 + +1.1
2,033,299 - -0.3
2,033,299 - +0.0
2,033,299 - +0.3
2,033,431 + -0.8
2,033,431 + +0.7
2,033,493 + +0.1
2,033,494 - -0.6
2,033,494 - -1.2
2,033,703 + ABZR86_RS09155 0.35 +2.2
2,033,703 + ABZR86_RS09155 0.35 +0.8
2,033,703 + ABZR86_RS09155 0.35 +0.1
2,033,704 - ABZR86_RS09155 0.35 -0.9
2,033,958 + ABZR86_RS09155 0.73 +0.6
2,033,958 + ABZR86_RS09155 0.73 +0.9
2,033,959 - ABZR86_RS09155 0.73 -0.5
2,033,959 - ABZR86_RS09155 0.73 +0.1
2,033,959 - ABZR86_RS09155 0.73 +0.1
2,033,959 - ABZR86_RS09155 0.73 -0.0
2,033,959 - ABZR86_RS09155 0.73 -0.5
2,033,959 - ABZR86_RS09155 0.73 +0.1
2,034,062 + ABZR86_RS09155 0.88 +0.8
2,034,063 - ABZR86_RS09155 0.88 -0.6
2,034,110 + +0.2
2,034,111 - -0.2
2,034,111 - +0.5
2,034,246 - +0.8
2,034,246 - -0.2
2,034,246 - -0.8
2,034,263 + +0.2
2,034,263 + -1.6

Or see this region's nucleotide sequence