Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1351

Experiment: MoYLS4 with Aluminum chloride 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1349 and rpsF are separated by 144 nucleotidesrpsF and rpsR are separated by 1 nucleotidesrpsR and rplI are separated by 9 nucleotidesrplI and DvMF_1353 are separated by 82 nucleotides DvMF_1349: DvMF_1349 - alanine racemase (RefSeq), at 1,647,728 to 1,648,846 _1349 DvMF_1350: rpsF - 30S ribosomal protein S6 (RefSeq), at 1,648,991 to 1,649,296 rpsF DvMF_1351: rpsR - 30S ribosomal protein S18 (RefSeq), at 1,649,298 to 1,649,561 rpsR DvMF_1352: rplI - 50S ribosomal protein L9 (RefSeq), at 1,649,571 to 1,650,074 rplI DvMF_1353: DvMF_1353 - replicative DNA helicase (RefSeq), at 1,650,157 to 1,651,509 _1353 Position (kb) 1649 1650Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1648.321 kb on + strand, within DvMF_1349at 1648.394 kb on + strand, within DvMF_1349at 1648.425 kb on - strand, within DvMF_1349at 1648.839 kb on + strandat 1648.871 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Aluminum chloride 5 mM
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1,648,321 + DvMF_1349 0.53 -1.4
1,648,394 + DvMF_1349 0.60 -2.5
1,648,425 - DvMF_1349 0.62 -5.0
1,648,839 + -0.2
1,648,871 + -0.4

Or see this region's nucleotide sequence