Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0142

Experiment: MoYLS4 with Aluminum chloride 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0141 and DvMF_0142 are separated by 365 nucleotidesDvMF_0142 and DvMF_0143 are separated by 402 nucleotides DvMF_0141: DvMF_0141 - dTDP-glucose 4,6-dehydratase (RefSeq), at 157,250 to 158,272 _0141 DvMF_0142: DvMF_0142 - anaerobic cobalt chelatase (RefSeq), at 158,638 to 159,510 _0142 DvMF_0143: DvMF_0143 - putative lipoprotein (RefSeq), at 159,913 to 160,863 _0143 Position (kb) 158 159 160Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 158.339 kb on - strandat 158.426 kb on + strandat 158.504 kb on + strandat 159.491 kb on + strandat 160.028 kb on - strand, within DvMF_0143at 160.146 kb on - strand, within DvMF_0143at 160.146 kb on - strand, within DvMF_0143at 160.227 kb on + strand, within DvMF_0143at 160.463 kb on + strand, within DvMF_0143at 160.494 kb on - strand, within DvMF_0143

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Aluminum chloride 5 mM
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158,339 - -0.4
158,426 + -0.3
158,504 + -0.1
159,491 + -0.3
160,028 - DvMF_0143 0.12 -1.4
160,146 - DvMF_0143 0.25 -4.1
160,146 - DvMF_0143 0.25 -0.9
160,227 + DvMF_0143 0.33 -0.8
160,463 + DvMF_0143 0.58 -1.8
160,494 - DvMF_0143 0.61 -0.9

Or see this region's nucleotide sequence