Experiment: Hyaluronic from Streptococcus equi
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0604 and BT0605 are separated by 1 nucleotides BT0605 and BT0606 are separated by 60 nucleotides
BT0604: BT0604 - putative coenzyme F420-reducing hydrogenase (NCBI ptt file), at 745,425 to 746,612
BT0604
BT0605: BT0605 - putative polysaccharide export protein (NCBI ptt file), at 746,614 to 748,059
BT0605
BT0606: BT0606 - hypothetical protein (NCBI ptt file), at 748,120 to 749,340
BT0606
Position (kb) 746
747
748
749 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 745.626 kb on - strand, within BT0604 at 745.664 kb on + strand, within BT0604 at 745.682 kb on + strand, within BT0604 at 745.682 kb on + strand, within BT0604 at 745.683 kb on - strand, within BT0604 at 745.833 kb on - strand, within BT0604 at 745.839 kb on - strand, within BT0604 at 745.860 kb on - strand, within BT0604 at 746.109 kb on - strand, within BT0604 at 746.167 kb on - strand, within BT0604 at 746.167 kb on - strand, within BT0604 at 746.424 kb on - strand, within BT0604 at 746.545 kb on - strand at 746.570 kb on - strand at 746.601 kb on - strand at 746.690 kb on + strand at 746.691 kb on - strand at 746.699 kb on + strand at 746.711 kb on + strand at 746.716 kb on - strand at 746.749 kb on + strand at 746.838 kb on + strand, within BT0605 at 746.873 kb on + strand, within BT0605 at 746.915 kb on + strand, within BT0605 at 746.932 kb on + strand, within BT0605 at 746.935 kb on + strand, within BT0605 at 746.973 kb on + strand, within BT0605 at 746.976 kb on - strand, within BT0605 at 747.018 kb on - strand, within BT0605 at 747.106 kb on - strand, within BT0605 at 747.116 kb on - strand, within BT0605 at 747.149 kb on + strand, within BT0605 at 747.242 kb on + strand, within BT0605 at 747.295 kb on - strand, within BT0605 at 747.441 kb on - strand, within BT0605 at 747.616 kb on + strand, within BT0605 at 747.665 kb on - strand, within BT0605 at 747.665 kb on - strand, within BT0605 at 747.694 kb on + strand, within BT0605 at 747.822 kb on + strand, within BT0605 at 747.823 kb on - strand, within BT0605 at 747.894 kb on + strand, within BT0605 at 747.913 kb on + strand, within BT0605 at 747.914 kb on - strand, within BT0605 at 747.916 kb on - strand at 747.918 kb on - strand at 748.080 kb on - strand at 748.080 kb on - strand at 748.118 kb on - strand at 748.189 kb on + strand at 748.236 kb on - strand at 748.248 kb on - strand, within BT0606 at 748.309 kb on + strand, within BT0606 at 748.388 kb on + strand, within BT0606 at 748.393 kb on + strand, within BT0606 at 748.520 kb on - strand, within BT0606 at 748.646 kb on - strand, within BT0606 at 748.650 kb on - strand, within BT0606 at 748.679 kb on - strand, within BT0606 at 748.862 kb on + strand, within BT0606 at 748.862 kb on + strand, within BT0606 at 748.867 kb on - strand, within BT0606 at 748.871 kb on + strand, within BT0606 at 749.037 kb on + strand, within BT0606 at 749.038 kb on - strand, within BT0606
Per-strain Table
Position Strand Gene LocusTag Fraction Hyaluronic from Streptococcus equi remove 745,626 - BT0604 0.17 +3.0 745,664 + BT0604 0.20 -0.2 745,682 + BT0604 0.22 -0.2 745,682 + BT0604 0.22 -2.1 745,683 - BT0604 0.22 +2.8 745,833 - BT0604 0.34 +0.7 745,839 - BT0604 0.35 -0.5 745,860 - BT0604 0.37 +0.8 746,109 - BT0604 0.58 -0.1 746,167 - BT0604 0.62 +1.1 746,167 - BT0604 0.62 -1.0 746,424 - BT0604 0.84 -1.2 746,545 - +1.4 746,570 - -0.2 746,601 - +0.1 746,690 + +0.4 746,691 - +1.2 746,699 + -0.2 746,711 + -1.2 746,716 - +0.8 746,749 + -2.5 746,838 + BT0605 0.15 -0.2 746,873 + BT0605 0.18 -0.8 746,915 + BT0605 0.21 +0.2 746,932 + BT0605 0.22 -0.8 746,935 + BT0605 0.22 -0.8 746,973 + BT0605 0.25 -1.4 746,976 - BT0605 0.25 -0.2 747,018 - BT0605 0.28 +3.0 747,106 - BT0605 0.34 +2.8 747,116 - BT0605 0.35 +0.5 747,149 + BT0605 0.37 -1.9 747,242 + BT0605 0.43 +1.8 747,295 - BT0605 0.47 +0.4 747,441 - BT0605 0.57 -0.0 747,616 + BT0605 0.69 +1.2 747,665 - BT0605 0.73 +2.3 747,665 - BT0605 0.73 -0.2 747,694 + BT0605 0.75 +1.7 747,822 + BT0605 0.84 +2.8 747,823 - BT0605 0.84 +2.4 747,894 + BT0605 0.89 +3.1 747,913 + BT0605 0.90 +2.4 747,914 - BT0605 0.90 +0.5 747,916 - -0.4 747,918 - +3.0 748,080 - +1.4 748,080 - +3.4 748,118 - +0.8 748,189 + -1.7 748,236 - -0.2 748,248 - BT0606 0.10 +0.9 748,309 + BT0606 0.15 +1.0 748,388 + BT0606 0.22 -1.8 748,393 + BT0606 0.22 -0.5 748,520 - BT0606 0.33 +1.8 748,646 - BT0606 0.43 +0.2 748,650 - BT0606 0.43 +0.8 748,679 - BT0606 0.46 +0.8 748,862 + BT0606 0.61 +1.1 748,862 + BT0606 0.61 +0.4 748,867 - BT0606 0.61 +1.9 748,871 + BT0606 0.62 +2.1 749,037 + BT0606 0.75 +3.8 749,038 - BT0606 0.75 -2.7
Or see this region's nucleotide sequence