Experiment: Hyaluronic from Streptococcus equi
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0600 and BT0601 are separated by 199 nucleotides BT0601 and BT0602 are separated by 19 nucleotides
BT0600: BT0600 - nucleotide sugar epimerase (NCBI ptt file), at 740,449 to 741,513
BT0600
BT0601: BT0601 - UDP-N-acetylglucosamine 2-epimerase (NCBI ptt file), at 741,713 to 742,924
BT0601
BT0602: BT0602 - UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase (NCBI ptt file), at 742,944 to 744,167
BT0602
Position (kb) 741
742
743 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 740.753 kb on + strand, within BT0600 at 740.785 kb on - strand, within BT0600 at 740.820 kb on - strand, within BT0600 at 740.857 kb on + strand, within BT0600 at 740.857 kb on + strand, within BT0600 at 740.871 kb on + strand, within BT0600 at 740.902 kb on + strand, within BT0600 at 740.953 kb on - strand, within BT0600 at 740.970 kb on - strand, within BT0600 at 741.119 kb on - strand, within BT0600 at 741.145 kb on + strand, within BT0600 at 741.168 kb on + strand, within BT0600 at 741.242 kb on + strand, within BT0600 at 741.245 kb on - strand, within BT0600 at 741.246 kb on + strand, within BT0600 at 741.247 kb on - strand, within BT0600 at 741.499 kb on - strand at 741.543 kb on - strand at 741.676 kb on - strand at 741.819 kb on + strand at 741.820 kb on - strand at 741.888 kb on - strand, within BT0601 at 742.098 kb on - strand, within BT0601 at 742.217 kb on + strand, within BT0601 at 742.250 kb on + strand, within BT0601 at 742.250 kb on + strand, within BT0601 at 742.253 kb on - strand, within BT0601 at 742.258 kb on - strand, within BT0601 at 742.262 kb on - strand, within BT0601 at 742.309 kb on - strand, within BT0601 at 742.421 kb on - strand, within BT0601 at 742.464 kb on + strand, within BT0601 at 742.464 kb on + strand, within BT0601 at 742.465 kb on - strand, within BT0601 at 742.471 kb on + strand, within BT0601 at 742.597 kb on + strand, within BT0601 at 742.598 kb on - strand, within BT0601 at 742.665 kb on + strand, within BT0601 at 742.666 kb on - strand, within BT0601 at 742.675 kb on + strand, within BT0601 at 742.733 kb on + strand, within BT0601 at 742.877 kb on + strand at 743.051 kb on + strand at 743.086 kb on + strand, within BT0602 at 743.139 kb on - strand, within BT0602 at 743.162 kb on - strand, within BT0602 at 743.162 kb on - strand, within BT0602 at 743.163 kb on + strand, within BT0602 at 743.181 kb on - strand, within BT0602 at 743.275 kb on + strand, within BT0602 at 743.276 kb on - strand, within BT0602 at 743.366 kb on - strand, within BT0602 at 743.481 kb on + strand, within BT0602 at 743.482 kb on - strand, within BT0602 at 743.573 kb on + strand, within BT0602 at 743.622 kb on - strand, within BT0602 at 743.843 kb on + strand, within BT0602
Per-strain Table
Position Strand Gene LocusTag Fraction Hyaluronic from Streptococcus equi remove 740,753 + BT0600 0.29 +1.3 740,785 - BT0600 0.32 -1.3 740,820 - BT0600 0.35 +0.8 740,857 + BT0600 0.38 -2.8 740,857 + BT0600 0.38 +0.6 740,871 + BT0600 0.40 -2.2 740,902 + BT0600 0.43 +2.0 740,953 - BT0600 0.47 -1.7 740,970 - BT0600 0.49 -0.3 741,119 - BT0600 0.63 +0.5 741,145 + BT0600 0.65 +1.0 741,168 + BT0600 0.68 +1.4 741,242 + BT0600 0.74 -0.4 741,245 - BT0600 0.75 +0.2 741,246 + BT0600 0.75 +1.2 741,247 - BT0600 0.75 -2.0 741,499 - +0.1 741,543 - +0.2 741,676 - +1.8 741,819 + -1.4 741,820 - +0.5 741,888 - BT0601 0.14 +3.2 742,098 - BT0601 0.32 -1.0 742,217 + BT0601 0.42 -1.4 742,250 + BT0601 0.44 -2.6 742,250 + BT0601 0.44 +1.5 742,253 - BT0601 0.45 +2.8 742,258 - BT0601 0.45 +1.8 742,262 - BT0601 0.45 -1.9 742,309 - BT0601 0.49 -3.1 742,421 - BT0601 0.58 +0.8 742,464 + BT0601 0.62 +1.6 742,464 + BT0601 0.62 +1.1 742,465 - BT0601 0.62 -2.5 742,471 + BT0601 0.63 -2.8 742,597 + BT0601 0.73 -1.2 742,598 - BT0601 0.73 -0.4 742,665 + BT0601 0.79 -1.9 742,666 - BT0601 0.79 +1.2 742,675 + BT0601 0.79 -1.9 742,733 + BT0601 0.84 -1.5 742,877 + +0.5 743,051 + +0.8 743,086 + BT0602 0.12 +0.8 743,139 - BT0602 0.16 +0.8 743,162 - BT0602 0.18 +1.5 743,162 - BT0602 0.18 -2.8 743,163 + BT0602 0.18 -0.8 743,181 - BT0602 0.19 -1.5 743,275 + BT0602 0.27 -0.9 743,276 - BT0602 0.27 -0.2 743,366 - BT0602 0.34 +2.6 743,481 + BT0602 0.44 -0.9 743,482 - BT0602 0.44 -0.2 743,573 + BT0602 0.51 -2.0 743,622 - BT0602 0.55 +0.5 743,843 + BT0602 0.73 +1.6
Or see this region's nucleotide sequence