Experiment: Vancomycin 0.24 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_778 and Pf6N2E2_779 overlap by 7 nucleotides Pf6N2E2_779 and Pf6N2E2_780 are separated by 342 nucleotides
Pf6N2E2_778 - Probable lipoprotein signal peptide, at 887,553 to 888,698
_778
Pf6N2E2_779 - transporter, putative, at 888,692 to 889,885
_779
Pf6N2E2_780 - FIG00955564: hypothetical protein, at 890,228 to 892,219
_780
Position (kb) 888
889
890 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 887.817 kb on + strand, within Pf6N2E2_778 at 887.817 kb on + strand, within Pf6N2E2_778 at 887.911 kb on + strand, within Pf6N2E2_778 at 888.063 kb on + strand, within Pf6N2E2_778 at 888.163 kb on - strand, within Pf6N2E2_778 at 888.270 kb on - strand, within Pf6N2E2_778 at 888.377 kb on + strand, within Pf6N2E2_778 at 888.378 kb on - strand, within Pf6N2E2_778 at 888.412 kb on - strand, within Pf6N2E2_778 at 888.697 kb on - strand at 888.709 kb on + strand at 888.710 kb on - strand at 888.710 kb on - strand at 888.710 kb on - strand at 888.710 kb on - strand at 888.859 kb on - strand, within Pf6N2E2_779 at 888.928 kb on - strand, within Pf6N2E2_779 at 889.086 kb on - strand, within Pf6N2E2_779 at 889.158 kb on + strand, within Pf6N2E2_779 at 889.159 kb on - strand, within Pf6N2E2_779 at 889.414 kb on - strand, within Pf6N2E2_779 at 889.414 kb on - strand, within Pf6N2E2_779 at 889.764 kb on + strand, within Pf6N2E2_779 at 889.764 kb on + strand, within Pf6N2E2_779 at 889.818 kb on + strand at 889.959 kb on + strand at 889.998 kb on + strand at 890.055 kb on + strand at 890.093 kb on - strand at 890.126 kb on - strand at 890.126 kb on - strand at 890.269 kb on + strand at 890.459 kb on + strand, within Pf6N2E2_780 at 890.459 kb on + strand, within Pf6N2E2_780 at 890.459 kb on + strand, within Pf6N2E2_780 at 890.460 kb on - strand, within Pf6N2E2_780 at 890.460 kb on - strand, within Pf6N2E2_780 at 890.460 kb on - strand, within Pf6N2E2_780 at 890.501 kb on + strand, within Pf6N2E2_780 at 890.502 kb on - strand, within Pf6N2E2_780 at 890.608 kb on + strand, within Pf6N2E2_780 at 890.608 kb on + strand, within Pf6N2E2_780 at 890.622 kb on - strand, within Pf6N2E2_780 at 890.693 kb on + strand, within Pf6N2E2_780 at 890.693 kb on + strand, within Pf6N2E2_780 at 890.693 kb on + strand, within Pf6N2E2_780 at 890.693 kb on + strand, within Pf6N2E2_780 at 890.693 kb on + strand, within Pf6N2E2_780 at 890.694 kb on - strand, within Pf6N2E2_780 at 890.725 kb on + strand, within Pf6N2E2_780 at 890.725 kb on + strand, within Pf6N2E2_780 at 890.725 kb on + strand, within Pf6N2E2_780 at 890.726 kb on - strand, within Pf6N2E2_780 at 890.758 kb on + strand, within Pf6N2E2_780 at 890.793 kb on - strand, within Pf6N2E2_780 at 890.875 kb on + strand, within Pf6N2E2_780
Per-strain Table
Position Strand Gene LocusTag Fraction Vancomycin 0.24 mg/ml remove 887,817 + Pf6N2E2_778 0.23 +0.1 887,817 + Pf6N2E2_778 0.23 -0.1 887,911 + Pf6N2E2_778 0.31 -0.5 888,063 + Pf6N2E2_778 0.45 +0.5 888,163 - Pf6N2E2_778 0.53 -0.4 888,270 - Pf6N2E2_778 0.63 +0.2 888,377 + Pf6N2E2_778 0.72 -1.1 888,378 - Pf6N2E2_778 0.72 -1.3 888,412 - Pf6N2E2_778 0.75 -1.7 888,697 - +0.3 888,709 + -0.7 888,710 - +0.4 888,710 - +0.6 888,710 - +0.6 888,710 - -1.0 888,859 - Pf6N2E2_779 0.14 +2.9 888,928 - Pf6N2E2_779 0.20 +0.5 889,086 - Pf6N2E2_779 0.33 +1.3 889,158 + Pf6N2E2_779 0.39 -1.7 889,159 - Pf6N2E2_779 0.39 +1.0 889,414 - Pf6N2E2_779 0.60 -0.3 889,414 - Pf6N2E2_779 0.60 -0.6 889,764 + Pf6N2E2_779 0.90 +0.6 889,764 + Pf6N2E2_779 0.90 +2.8 889,818 + +1.3 889,959 + -0.1 889,998 + -0.5 890,055 + -0.3 890,093 - -0.9 890,126 - -0.7 890,126 - +0.6 890,269 + -1.3 890,459 + Pf6N2E2_780 0.12 -0.1 890,459 + Pf6N2E2_780 0.12 -0.1 890,459 + Pf6N2E2_780 0.12 -0.9 890,460 - Pf6N2E2_780 0.12 -0.1 890,460 - Pf6N2E2_780 0.12 -1.7 890,460 - Pf6N2E2_780 0.12 -1.1 890,501 + Pf6N2E2_780 0.14 -0.1 890,502 - Pf6N2E2_780 0.14 -0.1 890,608 + Pf6N2E2_780 0.19 +1.9 890,608 + Pf6N2E2_780 0.19 -0.1 890,622 - Pf6N2E2_780 0.20 +0.6 890,693 + Pf6N2E2_780 0.23 +0.9 890,693 + Pf6N2E2_780 0.23 +0.4 890,693 + Pf6N2E2_780 0.23 +0.3 890,693 + Pf6N2E2_780 0.23 +0.6 890,693 + Pf6N2E2_780 0.23 +1.2 890,694 - Pf6N2E2_780 0.23 -2.7 890,725 + Pf6N2E2_780 0.25 -0.5 890,725 + Pf6N2E2_780 0.25 +0.2 890,725 + Pf6N2E2_780 0.25 +0.2 890,726 - Pf6N2E2_780 0.25 +0.0 890,758 + Pf6N2E2_780 0.27 -1.1 890,793 - Pf6N2E2_780 0.28 -1.3 890,875 + Pf6N2E2_780 0.32 -0.4
Or see this region's nucleotide sequence