Experiment: Vancomycin 0.24 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_753 and Pf6N2E2_754 are separated by 57 nucleotides Pf6N2E2_754 and Pf6N2E2_755 are separated by 24 nucleotides Pf6N2E2_755 and Pf6N2E2_756 are separated by 373 nucleotides Pf6N2E2_756 and Pf6N2E2_757 are separated by 274 nucleotides
Pf6N2E2_753 - AFG1-like ATPase, at 862,701 to 863,822
_753
Pf6N2E2_754 - Histone acetyltransferase HPA2 and related acetyltransferases, at 863,880 to 864,374
_754
Pf6N2E2_755 - UPF0141 membrane protein YijP possibly required for phosphoethanolamine modification of lipopolysaccharide, at 864,399 to 866,138
_755
Pf6N2E2_756 - hypothetical protein, at 866,512 to 866,685
_756
Pf6N2E2_757 - 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44), at 866,960 to 867,940
_757
Position (kb) 864
865
866
867 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 863.679 kb on + strand, within Pf6N2E2_753 at 863.679 kb on + strand, within Pf6N2E2_753 at 863.679 kb on + strand, within Pf6N2E2_753 at 863.680 kb on - strand, within Pf6N2E2_753 at 863.680 kb on - strand, within Pf6N2E2_753 at 863.733 kb on + strand at 863.733 kb on + strand at 863.733 kb on + strand at 863.734 kb on - strand at 863.734 kb on - strand at 863.734 kb on - strand at 863.734 kb on - strand at 863.745 kb on + strand at 863.828 kb on - strand at 863.905 kb on + strand at 863.905 kb on + strand at 863.905 kb on + strand at 863.919 kb on + strand at 863.919 kb on + strand at 863.919 kb on + strand at 864.297 kb on + strand, within Pf6N2E2_754 at 864.297 kb on + strand, within Pf6N2E2_754 at 864.348 kb on - strand at 864.604 kb on + strand, within Pf6N2E2_755 at 864.688 kb on + strand, within Pf6N2E2_755 at 864.688 kb on + strand, within Pf6N2E2_755 at 864.688 kb on + strand, within Pf6N2E2_755 at 864.688 kb on + strand, within Pf6N2E2_755 at 864.689 kb on - strand, within Pf6N2E2_755 at 864.689 kb on - strand, within Pf6N2E2_755 at 864.689 kb on - strand, within Pf6N2E2_755 at 864.776 kb on - strand, within Pf6N2E2_755 at 864.776 kb on - strand, within Pf6N2E2_755 at 864.776 kb on - strand, within Pf6N2E2_755 at 864.776 kb on - strand, within Pf6N2E2_755 at 864.776 kb on - strand, within Pf6N2E2_755 at 864.844 kb on + strand, within Pf6N2E2_755 at 864.844 kb on + strand, within Pf6N2E2_755 at 864.845 kb on - strand, within Pf6N2E2_755 at 864.862 kb on + strand at 864.862 kb on + strand, within Pf6N2E2_755 at 864.862 kb on + strand, within Pf6N2E2_755 at 864.872 kb on - strand, within Pf6N2E2_755 at 864.872 kb on - strand, within Pf6N2E2_755 at 864.907 kb on - strand, within Pf6N2E2_755 at 864.958 kb on + strand, within Pf6N2E2_755 at 864.958 kb on + strand, within Pf6N2E2_755 at 864.959 kb on - strand, within Pf6N2E2_755 at 864.965 kb on + strand, within Pf6N2E2_755 at 864.965 kb on + strand, within Pf6N2E2_755 at 864.966 kb on - strand, within Pf6N2E2_755 at 864.966 kb on - strand, within Pf6N2E2_755 at 864.966 kb on - strand, within Pf6N2E2_755 at 865.090 kb on + strand, within Pf6N2E2_755 at 865.090 kb on + strand, within Pf6N2E2_755 at 865.090 kb on + strand, within Pf6N2E2_755 at 865.090 kb on + strand, within Pf6N2E2_755 at 865.091 kb on - strand, within Pf6N2E2_755 at 865.091 kb on - strand, within Pf6N2E2_755 at 865.180 kb on + strand, within Pf6N2E2_755 at 865.225 kb on + strand, within Pf6N2E2_755 at 865.226 kb on - strand, within Pf6N2E2_755 at 865.285 kb on + strand, within Pf6N2E2_755 at 865.372 kb on + strand, within Pf6N2E2_755 at 865.373 kb on - strand, within Pf6N2E2_755 at 865.522 kb on + strand, within Pf6N2E2_755 at 865.777 kb on + strand, within Pf6N2E2_755 at 865.777 kb on + strand, within Pf6N2E2_755 at 865.778 kb on - strand, within Pf6N2E2_755 at 865.778 kb on - strand, within Pf6N2E2_755 at 865.778 kb on - strand, within Pf6N2E2_755 at 865.778 kb on - strand, within Pf6N2E2_755 at 865.790 kb on - strand, within Pf6N2E2_755 at 865.859 kb on - strand, within Pf6N2E2_755 at 865.870 kb on + strand, within Pf6N2E2_755 at 865.871 kb on - strand, within Pf6N2E2_755 at 866.057 kb on - strand at 866.211 kb on + strand at 866.211 kb on + strand at 866.211 kb on + strand at 866.224 kb on + strand at 866.224 kb on + strand at 866.224 kb on + strand at 866.224 kb on + strand at 866.225 kb on - strand at 866.228 kb on - strand at 866.420 kb on + strand at 866.421 kb on - strand at 866.421 kb on - strand at 866.453 kb on + strand at 866.453 kb on + strand at 866.454 kb on - strand at 866.454 kb on - strand at 866.593 kb on + strand, within Pf6N2E2_756 at 866.593 kb on + strand, within Pf6N2E2_756 at 866.594 kb on - strand, within Pf6N2E2_756 at 866.594 kb on - strand, within Pf6N2E2_756 at 866.615 kb on - strand, within Pf6N2E2_756 at 866.645 kb on + strand, within Pf6N2E2_756 at 866.646 kb on - strand, within Pf6N2E2_756 at 866.646 kb on - strand, within Pf6N2E2_756 at 866.646 kb on - strand, within Pf6N2E2_756 at 866.646 kb on - strand, within Pf6N2E2_756 at 866.706 kb on + strand at 866.706 kb on + strand at 866.707 kb on - strand at 866.715 kb on + strand at 866.715 kb on + strand at 866.715 kb on + strand at 866.715 kb on + strand at 866.715 kb on + strand at 866.715 kb on + strand at 866.716 kb on - strand at 866.716 kb on - strand at 866.716 kb on - strand at 866.717 kb on + strand at 866.717 kb on + strand at 866.717 kb on + strand at 866.717 kb on + strand at 866.718 kb on - strand at 866.718 kb on - strand at 866.718 kb on - strand at 866.718 kb on - strand at 866.718 kb on - strand at 866.733 kb on - strand at 866.733 kb on - strand at 866.749 kb on + strand at 866.750 kb on - strand at 866.753 kb on - strand at 866.863 kb on - strand at 866.873 kb on + strand at 866.873 kb on + strand at 866.874 kb on - strand at 866.910 kb on - strand at 866.917 kb on - strand at 866.929 kb on + strand at 866.929 kb on + strand at 866.930 kb on - strand at 866.935 kb on + strand at 866.935 kb on + strand at 866.935 kb on + strand at 866.935 kb on + strand at 866.936 kb on - strand at 866.936 kb on - strand at 866.941 kb on + strand at 866.944 kb on + strand at 866.945 kb on - strand at 867.044 kb on + strand at 867.045 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Vancomycin 0.24 mg/ml remove 863,679 + Pf6N2E2_753 0.87 +1.1 863,679 + Pf6N2E2_753 0.87 +0.3 863,679 + Pf6N2E2_753 0.87 +0.7 863,680 - Pf6N2E2_753 0.87 +1.9 863,680 - Pf6N2E2_753 0.87 +1.0 863,733 + +1.2 863,733 + -0.5 863,733 + +1.3 863,734 - -0.7 863,734 - +0.2 863,734 - +0.3 863,734 - +0.9 863,745 + -0.6 863,828 - +1.3 863,905 + -0.9 863,905 + +1.0 863,905 + +1.0 863,919 + +0.9 863,919 + -0.2 863,919 + +1.1 864,297 + Pf6N2E2_754 0.84 -1.0 864,297 + Pf6N2E2_754 0.84 +0.4 864,348 - +0.5 864,604 + Pf6N2E2_755 0.12 +0.3 864,688 + Pf6N2E2_755 0.17 +0.4 864,688 + Pf6N2E2_755 0.17 +1.2 864,688 + Pf6N2E2_755 0.17 +0.3 864,688 + Pf6N2E2_755 0.17 -0.5 864,689 - Pf6N2E2_755 0.17 -1.1 864,689 - Pf6N2E2_755 0.17 -0.7 864,689 - Pf6N2E2_755 0.17 -0.5 864,776 - Pf6N2E2_755 0.22 +0.2 864,776 - Pf6N2E2_755 0.22 +0.1 864,776 - Pf6N2E2_755 0.22 -0.8 864,776 - Pf6N2E2_755 0.22 -0.8 864,776 - Pf6N2E2_755 0.22 +0.9 864,844 + Pf6N2E2_755 0.26 +0.8 864,844 + Pf6N2E2_755 0.26 +1.1 864,845 - Pf6N2E2_755 0.26 -0.3 864,862 + -0.1 864,862 + Pf6N2E2_755 0.27 +0.5 864,862 + Pf6N2E2_755 0.27 -0.5 864,872 - Pf6N2E2_755 0.27 +2.2 864,872 - Pf6N2E2_755 0.27 +0.4 864,907 - Pf6N2E2_755 0.29 +0.5 864,958 + Pf6N2E2_755 0.32 +1.5 864,958 + Pf6N2E2_755 0.32 +1.0 864,959 - Pf6N2E2_755 0.32 -2.7 864,965 + Pf6N2E2_755 0.33 -0.1 864,965 + Pf6N2E2_755 0.33 -1.2 864,966 - Pf6N2E2_755 0.33 +0.3 864,966 - Pf6N2E2_755 0.33 -0.5 864,966 - Pf6N2E2_755 0.33 -0.5 865,090 + Pf6N2E2_755 0.40 +0.4 865,090 + Pf6N2E2_755 0.40 +1.1 865,090 + Pf6N2E2_755 0.40 +1.2 865,090 + Pf6N2E2_755 0.40 -0.1 865,091 - Pf6N2E2_755 0.40 +1.7 865,091 - Pf6N2E2_755 0.40 +0.9 865,180 + Pf6N2E2_755 0.45 +0.5 865,225 + Pf6N2E2_755 0.47 +2.3 865,226 - Pf6N2E2_755 0.48 -0.1 865,285 + Pf6N2E2_755 0.51 -0.0 865,372 + Pf6N2E2_755 0.56 +1.5 865,373 - Pf6N2E2_755 0.56 -2.1 865,522 + Pf6N2E2_755 0.65 +0.9 865,777 + Pf6N2E2_755 0.79 +0.1 865,777 + Pf6N2E2_755 0.79 +0.7 865,778 - Pf6N2E2_755 0.79 +0.6 865,778 - Pf6N2E2_755 0.79 -0.1 865,778 - Pf6N2E2_755 0.79 -0.3 865,778 - Pf6N2E2_755 0.79 +0.0 865,790 - Pf6N2E2_755 0.80 +1.2 865,859 - Pf6N2E2_755 0.84 +0.2 865,870 + Pf6N2E2_755 0.85 -0.7 865,871 - Pf6N2E2_755 0.85 +0.3 866,057 - -0.3 866,211 + +0.7 866,211 + +0.7 866,211 + -0.9 866,224 + -0.1 866,224 + +0.2 866,224 + -1.0 866,224 + +0.7 866,225 - +0.9 866,228 - +1.8 866,420 + -1.0 866,421 - +0.5 866,421 - +1.4 866,453 + +1.7 866,453 + -1.7 866,454 - -1.4 866,454 - +0.1 866,593 + Pf6N2E2_756 0.47 -2.1 866,593 + Pf6N2E2_756 0.47 +0.2 866,594 - Pf6N2E2_756 0.47 -0.1 866,594 - Pf6N2E2_756 0.47 +0.5 866,615 - Pf6N2E2_756 0.59 -0.1 866,645 + Pf6N2E2_756 0.76 -1.7 866,646 - Pf6N2E2_756 0.77 +3.5 866,646 - Pf6N2E2_756 0.77 +0.1 866,646 - Pf6N2E2_756 0.77 -1.0 866,646 - Pf6N2E2_756 0.77 -0.2 866,706 + -1.1 866,706 + -0.8 866,707 - +1.7 866,715 + +1.0 866,715 + +1.0 866,715 + +0.7 866,715 + +0.9 866,715 + -0.1 866,715 + -0.6 866,716 - -0.8 866,716 - -1.0 866,716 - -0.0 866,717 + -0.9 866,717 + -0.1 866,717 + -1.4 866,717 + -2.3 866,718 - +0.8 866,718 - +0.2 866,718 - +1.0 866,718 - -0.2 866,718 - +0.9 866,733 - +1.0 866,733 - +0.2 866,749 + -0.9 866,750 - -0.7 866,753 - +0.9 866,863 - +1.4 866,873 + +0.0 866,873 + +0.1 866,874 - -0.0 866,910 - +1.2 866,917 - -0.1 866,929 + +0.1 866,929 + -1.7 866,930 - +0.1 866,935 + -0.3 866,935 + -1.3 866,935 + -0.6 866,935 + +0.0 866,936 - -1.4 866,936 - +0.4 866,941 + -0.6 866,944 + +0.5 866,945 - +0.0 867,044 + +0.7 867,045 - +2.0
Or see this region's nucleotide sequence