Experiment: Vancomycin 0.24 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_744 and Pf6N2E2_745 are separated by 164 nucleotides Pf6N2E2_745 and Pf6N2E2_746 are separated by 160 nucleotides Pf6N2E2_746 and Pf6N2E2_747 are separated by 3 nucleotides
Pf6N2E2_744 - Trans-feruloyl-CoA synthase (EC 6.2.1.34), at 854,309 to 856,186
_744
Pf6N2E2_745 - Probable transmembrane protein, at 856,351 to 856,668
_745
Pf6N2E2_746 - FIG00958097: hypothetical protein, at 856,829 to 857,083
_746
Pf6N2E2_747 - Transcriptional regulator in custer with plant-induced nitrilase, at 857,087 to 857,986
_747
Position (kb) 856
857 Strain fitness (log2 ratio) -2
-1
0
1
2 at 855.382 kb on + strand, within Pf6N2E2_744 at 855.383 kb on - strand, within Pf6N2E2_744 at 855.431 kb on - strand, within Pf6N2E2_744 at 855.640 kb on - strand, within Pf6N2E2_744 at 856.184 kb on + strand at 856.184 kb on + strand at 856.270 kb on + strand at 856.271 kb on - strand at 856.363 kb on + strand at 856.364 kb on - strand at 856.433 kb on + strand, within Pf6N2E2_745 at 856.433 kb on + strand, within Pf6N2E2_745 at 856.433 kb on + strand, within Pf6N2E2_745 at 856.433 kb on + strand, within Pf6N2E2_745 at 856.433 kb on + strand, within Pf6N2E2_745 at 856.433 kb on + strand, within Pf6N2E2_745 at 856.433 kb on + strand, within Pf6N2E2_745 at 856.433 kb on + strand, within Pf6N2E2_745 at 856.434 kb on - strand, within Pf6N2E2_745 at 856.434 kb on - strand, within Pf6N2E2_745 at 856.434 kb on - strand, within Pf6N2E2_745 at 856.434 kb on - strand, within Pf6N2E2_745 at 856.659 kb on + strand at 856.674 kb on + strand at 856.674 kb on + strand at 856.674 kb on + strand at 856.675 kb on - strand at 856.794 kb on + strand at 856.794 kb on + strand at 856.794 kb on + strand at 856.794 kb on + strand at 856.795 kb on - strand at 856.795 kb on - strand at 856.795 kb on - strand at 856.795 kb on - strand at 856.811 kb on - strand at 856.811 kb on - strand at 856.822 kb on - strand at 857.031 kb on - strand, within Pf6N2E2_746 at 857.043 kb on + strand, within Pf6N2E2_746 at 857.081 kb on + strand at 857.081 kb on + strand at 857.081 kb on + strand at 857.081 kb on + strand at 857.081 kb on + strand at 857.081 kb on + strand at 857.082 kb on - strand at 857.082 kb on - strand at 857.088 kb on + strand at 857.088 kb on + strand at 857.088 kb on + strand at 857.089 kb on - strand at 857.089 kb on - strand at 857.123 kb on + strand at 857.123 kb on + strand at 857.476 kb on - strand, within Pf6N2E2_747
Per-strain Table
Position Strand Gene LocusTag Fraction Vancomycin 0.24 mg/ml remove 855,382 + Pf6N2E2_744 0.57 -1.1 855,383 - Pf6N2E2_744 0.57 -1.1 855,431 - Pf6N2E2_744 0.60 -0.0 855,640 - Pf6N2E2_744 0.71 +1.1 856,184 + -0.3 856,184 + +0.8 856,270 + -0.5 856,271 - +0.2 856,363 + +0.7 856,364 - +0.0 856,433 + Pf6N2E2_745 0.26 -0.1 856,433 + Pf6N2E2_745 0.26 +2.0 856,433 + Pf6N2E2_745 0.26 -0.5 856,433 + Pf6N2E2_745 0.26 -0.7 856,433 + Pf6N2E2_745 0.26 -0.1 856,433 + Pf6N2E2_745 0.26 +0.4 856,433 + Pf6N2E2_745 0.26 +1.0 856,433 + Pf6N2E2_745 0.26 +1.7 856,434 - Pf6N2E2_745 0.26 +0.6 856,434 - Pf6N2E2_745 0.26 +0.3 856,434 - Pf6N2E2_745 0.26 +0.0 856,434 - Pf6N2E2_745 0.26 +1.7 856,659 + +0.8 856,674 + -1.0 856,674 + -0.3 856,674 + -0.4 856,675 - -0.2 856,794 + -0.8 856,794 + -1.7 856,794 + -0.8 856,794 + -0.1 856,795 - -0.6 856,795 - -1.6 856,795 - -1.2 856,795 - -1.0 856,811 - -2.7 856,811 - -0.4 856,822 - -1.4 857,031 - Pf6N2E2_746 0.79 -0.7 857,043 + Pf6N2E2_746 0.84 +0.1 857,081 + -2.0 857,081 + -0.8 857,081 + -0.6 857,081 + +0.9 857,081 + -1.1 857,081 + -1.4 857,082 - +1.3 857,082 - +1.2 857,088 + -2.1 857,088 + -0.4 857,088 + +0.0 857,089 - +0.4 857,089 - -0.9 857,123 + -0.9 857,123 + -0.1 857,476 - Pf6N2E2_747 0.43 +0.7
Or see this region's nucleotide sequence